RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 Q0VFX4 171 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 DPH3Q96FX2 82 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 LRRK1Q38SD2 2015 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 CD7P09564 240 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 C18orf32Q8TCD1 76 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 DUX3Q96PT4 197 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 NLRC5Q86WI3 1866 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 IGKV2-40A0A087WW87 121 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 IGKV3D-20A0A0C4DH25 116 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 IGKV2D-40P01614 121 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 KIR3DS1Q14943 382 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 Q86TA4 180 aa15.51■□□□□ 0.07
CCDC88B-204ENST00000463837 MLNRO43193 412 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 PAX2Q02962 417 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 GAFA1Q96PS6 74 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 IGKV1D-17A0A075B6S4 117 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 CNTFRP26992 372 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 LSM4Q9Y4Z0 139 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 IGHV1-3A0A0C4DH29 117 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 GAGE12BA1L429 117 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 SH2D1AO60880 128 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 TRAV8-4A0A0B4J246 113 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 TRBV7-9A0A0J9YWB2 115 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 NCOR1P1Q9H4R4 102 aa15.5■□□□□ 0.07
CCDC88B-204ENST00000463837 CKS1BP61024 79 aa15.49■□□□□ 0.07
CCDC88B-204ENST00000463837 LY6DQ14210 128 aa15.49■□□□□ 0.07
CCDC88B-204ENST00000463837 FAM231DQ6ZW35 169 aa15.49■□□□□ 0.07
CCDC88B-204ENST00000463837 MDS2Q8NDY4 140 aa15.49■□□□□ 0.07
CCDC88B-204ENST00000463837 TMEM178BH3BS89 294 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 IGLC2P0DOY2 106 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 IGLC3P0DOY3 106 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 KIAA2026Q5HYC2 2103 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 RBMY1BA6NDE4 496 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 RBMY1EA6NEQ0 496 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 TMEM238C9JI98 176 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 RBMY1DP0C7P1 496 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 RBMY1A1P0DJD3 496 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 RBMY1CP0DJD4 496 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 ERG28Q9UKR5 140 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 LYNX1G3V0Z9 82 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 LYNX1P0DP58 116 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 PDE6HQ13956 83 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 SIGLEC15Q6ZMC9 328 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 ITLN2Q8WWU7 325 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 TMEM14BQ9NUH8 114 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 IGLV3-1P01715 115 aa15.48■□□□□ 0.07
CCDC88B-204ENST00000463837 TRGV11A0A075B6L2 103 aa15.47■□□□□ 0.07
CCDC88B-204ENST00000463837 PLXNA2O75051 1894 aa15.47■□□□□ 0.07
CCDC88B-204ENST00000463837 GTSF1LQ9H1H1 148 aa15.47■□□□□ 0.07
CCDC88B-204ENST00000463837 THSD7BQ9C0I4 1608 aa15.47■□□□□ 0.07
CCDC88B-204ENST00000463837 TRAV8-1A0A0A6YYK1 113 aa15.47■□□□□ 0.07
CCDC88B-204ENST00000463837 LINC00479Q96M42 142 aa15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 FNDC1Q4ZHG4 1894 aaPredicted RBP15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 SPTBN1Q01082 2364 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 IGHV3-64A0A075B6Q5 118 aa15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 PAX8Q06710 450 aa15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 Q6ZWC4 215 aa15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 DLX4Q92988 240 aaPredicted RBP15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 TDGF1P13385 188 aa15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 PHF3Q92576 2039 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-204ENST00000463837 VDAC2P45880 294 aaPredicted RBP15.46■□□□□ 0.06
CCDC88B-204ENST00000463837 TMEM249Q2WGJ8 235 aa15.46■□□□□ 0.06
CCDC88B-204ENST00000463837 HS3ST6Q96QI5 342 aa15.46■□□□□ 0.06
CCDC88B-204ENST00000463837 MINOS1Q5TGZ0 78 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 PLEKHB2Q96CS7 222 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 SIGLEC9Q9Y336 463 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 MINOS1-NBL1R4GNA1 71 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 V9GYV3 84 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 IGKV1-39P01597 117 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 IGKV1D-39P04432 117 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 TMEM75Q8N9X5 138 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 C11orf52Q96A22 123 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 MLANAQ16655 118 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 WIPF3A6NGB9 483 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 RPL15P61313 204 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 C9orf139Q6ZV77 190 aa15.45■□□□□ 0.06
CCDC88B-204ENST00000463837 NCOR1O75376 2440 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 SMIM27A0A1W2PRY6 76 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 ZFAND6Q6FIF0 208 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 LINC01587Q99440 93 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 DPH3P1Q9H4G8 78 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 WNT2P09544 360 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 SHANK2-AS3Q9BTD1 123 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 TEX43Q6ZNM6 134 aa15.44■□□□□ 0.06
CCDC88B-204ENST00000463837 IGHG3P01860 377 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 CHAC1Q9BUX1 264 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 ATXN8Q156A1 80 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 TCF20Q9UGU0 1960 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 PRTN3P24158 256 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 GAGE2BQ13066 116 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 GAGE2EQ4V326 116 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 GAGE2DQ9UEU5 116 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 CD28P10747 220 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 OCIAD2Q56VL3 154 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 ROS1P08922 2347 aa15.43■□□□□ 0.06
CCDC88B-204ENST00000463837 GHRHP01286 108 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 LINC00477Q96M19 166 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
CCDC88B-204ENST00000463837 NPSP0C0P6 89 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 141.4 ms