RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ZNF329Q86UD4 541 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 TM2D3Q9BRN9 247 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 TP73-AS1Q9UF72 201 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 TIMM9Q9Y5J7 89 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 STAB1Q9NY15 2570 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 ABCA7Q8IZY2 2146 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 MYH2Q9UKX2 1941 aa1.6□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3-73A0A0B4J1V6 119 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1D-43A0A0B4J1Z2 117 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 H3BMM0 161 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 HIST1H2BKO60814 126 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 NPYP01303 97 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 HIST1H2BJP06899 126 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 OCIAD2Q56VL3 154 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 GLYATL3Q5SZD4 288 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 PRR15Q8IV56 129 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 C11orf42Q8N5U0 333 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 CNEP1R1Q8N9A8 125 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 ZFP62Q8NB50 900 aaPredicted RBP1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 UBE2WQ96B02 151 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 CARD19Q96LW7 228 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 LHX9Q9NQ69 397 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 CRCT1Q9UGL9 99 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 U3KQK5 164 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 WNK1Q9H4A3 2382 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.59□□□□□ -2.152e-10■■■■□ 23.8
CCDC88A-208ENST00000444458 KIF1BO60333 1816 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 KIF26BQ2KJY2 2108 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV1-58A0A0C4DH39 117 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 CYSRT1A8MQ03 144 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 A8MWV9 139 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 LY6HO94772 140 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3-7P01780 117 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 C1QAP02745 245 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 AZU1P20160 251 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 GNB2P62879 340 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 C14orf177Q52M58 125 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC01554Q52M75 96 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 NOXRED1Q6NXP6 359 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 OR4S1Q8NGB4 309 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 PRELID3AQ96N28 172 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 PSMG3Q9BT73 122 aaPredicted RBP1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 MRPL32Q9BYC8 188 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 TXNL4BQ9NX01 149 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 CHD5Q8TDI0 1954 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 SBF2Q86WG5 1849 aa1.59□□□□□ -2.15
CCDC88A-208ENST00000444458 GTF3C1Q12789 2109 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 CEP162Q5TB80 1403 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 PHOX2AO14813 284 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 IGLV7-43P04211 117 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 PPP3R1P63098 170 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 AMMECR1LQ6DCA0 310 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 Q6ZTC4 211 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 RPP25LQ8N5L8 163 aaKnown RBP1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 WFDC5Q8TCV5 224 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 DCANP1Q8TF63 244 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 ZC2HC1AQ96GY0 325 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 RERGLQ9H628 205 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 TDRD6O60522 2096 aaKnown RBP1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 ANKRD12Q6UB98 2062 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 DOCK6Q96HP0 2047 aa1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 NUP214P35658 2090 aaPredicted RBP1.59□□□□□ -2.16
CCDC88A-208ENST00000444458 OR2T8A6NH00 312 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM212A6NML5 194 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TP53I11O14683 189 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 NPFFO15130 113 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 FUT5Q11128 374 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF141Q15928 474 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 C8orf59Q8N0T1 100 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM105Q8N8V8 129 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 OR4B1Q8NGF8 309 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM106AQ96A25 262 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 IMMP2LQ96T52 175 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TMEM133Q9H2Q1 129 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TNFRSF19Q9NS68 423 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 OR5V1Q9UGF6 321 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 NAV1Q8NEY1 1877 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 NHSQ6T4R5 1651 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 GGTLC3B5MD39 225 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 H3BT86 120 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 K7ERJ3 54 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RER1O15258 196 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF19P17023 458 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 CRYGSP22914 178 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 MSRB3Q8IXL7 192 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ZFAND2AQ8N6M9 145 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 WFDC11Q8NEX6 87 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ZNF418Q8TF45 676 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 C14orf144Q96I85 54 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ASF1BQ9NVP2 202 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RNF11Q9Y3C5 154 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RGPD8O14715 1765 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 RGPD5Q99666 1765 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 CDC42BPAQ5VT25 1732 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 ARRDC5A6NEK1 342 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 C17orf51A8MQB3 221 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 M0R378 163 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 TCL1BO95988 128 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 IGLC6P0CF74 106 aa1.58□□□□□ -2.16
CCDC88A-208ENST00000444458 LINC00694P0DN24 101 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms