RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 C10orf113Q5VZT2 155 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 LINC00305Q7Z4B0 112 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 KIR2DL5AQ8N109 375 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 KIR2DL5BQ8NHK3 375 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 C16orf92Q96LL3 132 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 GPR82Q96P67 336 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 SMIM3Q9BZL3 60 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 CSTL1Q9H114 145 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 HSPB11Q9Y547 144 aa13.74□□□□□ -0.21
SHH-204ENST00000441114 UBE2CO00762 179 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 ATF4P18848 351 aaPredicted RBP13.73□□□□□ -0.21
SHH-204ENST00000441114 DEFB1P60022 68 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 B2MP61769 119 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PRR20EP86478 221 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PRR20CP86479 221 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PRR20DP86480 221 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PRR20BP86481 221 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PRR20AP86496 221 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 TMEM37Q8WXS4 190 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 OVOL2Q9BRP0 275 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 SLC39A9Q9NUM3 307 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 PXMP4Q9Y6I8 212 aa13.73□□□□□ -0.21
SHH-204ENST00000441114 SOCS3O14543 225 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 SPRY2O43597 315 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 RPL7P18124 248 aaKnown RBP13.72□□□□□ -0.21
SHH-204ENST00000441114 RPL29P47914 159 aaKnown RBP13.72□□□□□ -0.21
SHH-204ENST00000441114 PSMB3P49720 205 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 MEOX2P50222 304 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 NPCDR1Q9BY65 106 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 SEPSECSQ9HD40 501 aaKnown RBP13.72□□□□□ -0.21
SHH-204ENST00000441114 DNAJC4Q9NNZ3 241 aa13.72□□□□□ -0.21
SHH-204ENST00000441114 ELOA3CA0A087WX78 387 aaPredicted RBP13.71□□□□□ -0.21
SHH-204ENST00000441114 MPDU1O75352 247 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 CA1P00915 261 aaPredicted RBP13.71□□□□□ -0.21
SHH-204ENST00000441114 MORN5Q5VZ52 161 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 IGFL4Q6B9Z1 124 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 Q6ZWC4 215 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 TRPT1Q86TN4 253 aaKnown RBP13.71□□□□□ -0.21
SHH-204ENST00000441114 OR1L4Q8NGR5 311 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 C17orf77Q96MU5 243 aa13.71□□□□□ -0.21
SHH-204ENST00000441114 ISLRO14498 428 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 SNRPCP09234 159 aaKnown RBP13.7□□□□□ -0.22
SHH-204ENST00000441114 LYL1P12980 280 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 C20orf173Q96LM9 149 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 PFDN5Q99471 154 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 ATP5SQ99766 215 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 WDR61Q9GZS3 305 aaKnown RBP13.7□□□□□ -0.22
SHH-204ENST00000441114 RNF24Q9Y225 148 aa13.7□□□□□ -0.22
SHH-204ENST00000441114 TENM3Q9P273 2699 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 TRAV5A0A0B4J249 113 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 IGKV3-20P01619 116 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 GIPP09681 153 aaPredicted RBP13.69□□□□□ -0.22
SHH-204ENST00000441114 Q5BKY6 102 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 ZNF709Q8N972 641 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 LRRC20Q8TCA0 184 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 CHAC2Q8WUX2 184 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 RNF183Q96D59 192 aa13.69□□□□□ -0.22
SHH-204ENST00000441114 NBEAL2Q6ZNJ1 2754 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 F6UB75 175 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 IFNA5P01569 189 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 GDF5OSQ5U4N7 250 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 SAMD13Q5VXD3 122 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 SCGB1C1Q8TD33 95 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 EDA2RQ9HAV5 297 aa13.68□□□□□ -0.22
SHH-204ENST00000441114 C17orf112F2Z3M2 114 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 H3BMM0 161 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 H3BTX0 84 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 GCSAMLQ5JQS6 135 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 MORN3Q6PF18 240 aaPredicted RBP13.67□□□□□ -0.22
SHH-204ENST00000441114 BPIFA4PQ86YQ2 179 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 RNF182Q8N6D2 247 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 SAV1Q9H4B6 383 aaPredicted RBP13.67□□□□□ -0.22
SHH-204ENST00000441114 WFDC1Q9HC57 220 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 RPRMQ9NS64 109 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 TP53TG1Q9Y2A0 90 aa13.67□□□□□ -0.22
SHH-204ENST00000441114 A0A087X0K7 114 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 TRAV8-2A0A0B4J237 113 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 MRPS12O15235 138 aaKnown RBP13.66□□□□□ -0.22
SHH-204ENST00000441114 SPP1P10451 314 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 C4BPBP20851 252 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 HLA-DMBP28068 263 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 EBLN2Q6P2I7 272 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 OR4B1Q8NGF8 309 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 GATAD1Q8WUU5 269 aa13.66□□□□□ -0.22
SHH-204ENST00000441114 PRB4P10163 310 aaPredicted RBP13.65□□□□□ -0.22
SHH-204ENST00000441114 HLA-DRB4P13762 266 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 FXYD7P58549 80 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 FAM78BQ5VT40 261 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 FOXI2Q6ZQN5 318 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 MUC7Q8TAX7 377 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 ASB13Q8WXK3 278 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 KCNIP2Q9NS61 270 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 CLEC5AQ9NY25 188 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 HLA-DRB4X5D2U9 266 aa13.65□□□□□ -0.22
SHH-204ENST00000441114 FXYD6-FXYD2A0A087WZ82 144 aa13.64□□□□□ -0.23
SHH-204ENST00000441114 GIG44P09565 113 aaPredicted RBP13.64□□□□□ -0.23
SHH-204ENST00000441114 ZNF738Q8NE65 137 aa13.64□□□□□ -0.23
SHH-204ENST00000441114 OR2T35Q8NGX2 323 aa13.64□□□□□ -0.23
SHH-204ENST00000441114 RARRES2Q99969 163 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms