RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TGIF1Q15583 401 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 MYO9AB2RTY4 2548 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 CCL3P10147 92 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 KLF5Q13887 457 aaPredicted RBP5.96□□□□□ -1.46
VPS53-204ENST00000437048 TMEM155Q4W5P6 130 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 IGLV3-12A0A075B6K2 115 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 IMUPQ9GZP8 106 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 FAM60AQ9NP50 221 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 H3BT86 120 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 STPG4Q8N801 248 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 KLK15Q9H2R5 256 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 VWA8A3KMH1 1905 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 IGKV1D-16P01601 117 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 GUSBP11Q6P575 273 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 SNHG12Q9BXW3 62 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 ANAPC10Q9UM13 185 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 ZC2HC1BQ5TFG8 222 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 VSIG2Q96IQ7 327 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 ANAPC1Q9H1A4 1944 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 ACACBO00763 2458 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 PLXNA4Q9HCM2 1894 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 IGHV5-10-1A0A0J9YXX1 117 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 PFN1P07737 140 aaKnown RBP5.95□□□□□ -1.46
VPS53-204ENST00000437048 FAM74A4Q5TZK3 123 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 ZNF493Q6ZR52 646 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 PRSS41Q7RTY9 318 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 Q8N8P6 123 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 TMEM133Q9H2Q1 129 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 ZFYVE26Q68DK2 2539 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 EML5Q05BV3 1969 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 HLA-DRB4P13762 266 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 HIST1H4AP62805 103 aaKnown RBP5.95□□□□□ -1.46
VPS53-204ENST00000437048 HERV-K104P63124 156 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 DUX5Q96PT3 197 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 FBXL7Q9UJT9 491 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 HLA-DRB4X5D2U9 266 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 PF4P02776 101 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 CXCL1P09341 107 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 UCN2Q96RP3 112 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 A0A1W2PPI3 338 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 FAM223BA6NKX1 122 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 RNASE1P07998 156 aaKnown RBP5.95□□□□□ -1.46
VPS53-204ENST00000437048 FAM223AQ8IWN6 122 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 SRRM5B3KS81 715 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 IGHV4-39P01824 125 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 HCP5Q6MZN7 132 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 DUX3Q96PT4 197 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 FRMPD3Q5JV73 1810 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 KNCNA6PVL3 124 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 PSG1P11464 419 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 DSCR9P59020 149 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 IGKV1-8A0A0C4DH67 115 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 JMJD7-PLA2G4BH0Y9G9 81 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 IGLV3-19P01714 112 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 C11orf44Q8N8P7 122 aa5.95□□□□□ -1.46
VPS53-204ENST00000437048 SUPT4H1P63272 117 aaKnown RBP5.95□□□□□ -1.46
VPS53-204ENST00000437048 IGKV3D-11A0A0A0MRZ8 115 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 PRDM6Q9NQX0 595 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 CCL13Q99616 98 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 M0R1W7 72 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 TFF3Q07654 80 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 C18orf32Q8TCD1 76 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 HS3ST6Q96QI5 342 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 D6R8Y8 96 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 RFLNBQ8N5W9 214 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 DSCR8Q96T75 97 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 DTX4Q9Y2E6 619 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 hADV29S1A0JD25 119 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 MIR17HGQ75NE6 70 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 WDR87Q6ZQQ6 2873 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 C9JAW5 83 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 HILPDAQ9Y5L2 63 aa5.94□□□□□ -1.46
VPS53-204ENST00000437048 ZAR1Q86SH2 424 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 RBAKDNA6NC62 111 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 TRGV3P03979 118 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 FOXG1P55316 489 aaPredicted RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 CENPVQ7Z7K6 275 aaPredicted RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 ITLN1Q8WWA0 313 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 AMELYQ99218 206 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SAA1P0DJI8 122 aaPredicted RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 FAM104BQ5XKR9 115 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SP7Q8TDD2 431 aaPredicted RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 SPINK14Q6IE38 97 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SIGLEC15Q6ZMC9 328 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 POLR3KQ9Y2Y1 108 aaPredicted RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 ERCC8Q13216 396 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 NCR2O95944 276 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 VEGFBP49765 207 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SHISA7A6NL88 538 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 C17orf98A8MV24 154 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 IGHV3-13P01766 116 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 IGHV3-7P01780 117 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SMIM27A0A1W2PRY6 76 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 SPEM2Q0P670 501 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 CARD19Q96LW7 228 aa5.93□□□□□ -1.46
VPS53-204ENST00000437048 ZCCHC24Q8N2G6 241 aaKnown RBP5.93□□□□□ -1.46
VPS53-204ENST00000437048 ADARB2-AS1A8MUL3 147 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 SS18Q15532 418 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 PAX4O43316 350 aa5.92□□□□□ -1.46
VPS53-204ENST00000437048 PEBP1P30086 187 aaKnown RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms