RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 COX11Q9Y6N1 276 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 TMEM265A0A087WTH1 108 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 C16orf97H3BN30 126 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 TCRAP04437 139 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 PPIFP30405 207 aaKnown RBP9.98□□□□□ -0.81
CDH3-202ENST00000429102 PLA2G2CQ5R387 149 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 PTPRQQ9UMZ3 2332 aa9.98□□□□□ -0.81
CDH3-202ENST00000429102 FCER1GP30273 86 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 UBE2V1Q13404 147 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 PRR30Q53SZ7 412 aaPredicted RBP9.97□□□□□ -0.81
CDH3-202ENST00000429102 VSTM2AQ8TAG5 236 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 RASL11BQ9BPW5 248 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 TMEM191AQ9H0A3 160 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 HIGD1AQ9Y241 93 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 IGLV3-9A0A075B6K5 115 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 SYS1-DBNDD2H3BUS1 97 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 CR1LQ2VPA4 569 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 OR5AN1Q8NGI8 311 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 MAP1LC3CQ9BXW4 147 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.97□□□□□ -0.81
CDH3-202ENST00000429102 IGHV3-66A0A0C4DH42 116 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 PSMB11A5LHX3 300 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 ARF6P62330 175 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 RPEQ96AT9 228 aa9.97□□□□□ -0.81
CDH3-202ENST00000429102 IGHV3-49A0A0A0MS15 119 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 MBD3L4A6NDZ8 208 aaPredicted RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 MBD3L3A6NE82 208 aaPredicted RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 MBD3L5A6NJ08 208 aaPredicted RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 IL4P05112 153 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 PRSS57Q6UWY2 283 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 ZNF833PQ6ZTB9 187 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 MBD3L2Q8NHZ7 208 aaPredicted RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 LINC01560Q8TB33 94 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 NCR2O95944 276 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 RPL24P83731 157 aaKnown RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 RELQ04864 619 aaPredicted RBP9.96□□□□□ -0.81
CDH3-202ENST00000429102 C19orf24Q9BVV8 132 aa9.96□□□□□ -0.81
CDH3-202ENST00000429102 SPTBN4Q9H254 2564 aa9.96□□□□□ -0.82
CDH3-202ENST00000429102 LOXL1Q08397 574 aaPredicted RBP9.96□□□□□ -0.82
CDH3-202ENST00000429102 COX19Q49B96 90 aa9.96□□□□□ -0.82
CDH3-202ENST00000429102 PNKDQ8N490 385 aa9.96□□□□□ -0.82
CDH3-202ENST00000429102 Q8TAT8 98 aa9.96□□□□□ -0.82
CDH3-202ENST00000429102 TMEM167AQ8TBQ9 72 aa9.96□□□□□ -0.82
CDH3-202ENST00000429102 RAI1Q7Z5J4 1906 aaPredicted RBP9.96□□□□□ -0.82
CDH3-202ENST00000429102 A0A0G2JNJ9 132 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 TMEM213A2RRL7 107 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 NCBP2LA6PVI3 153 aaKnown RBP9.95□□□□□ -0.82
CDH3-202ENST00000429102 POU2AF1Q16633 256 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 C8orf49Q96NF6 230 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 TMEM133Q9H2Q1 129 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 Q9UFV3 132 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 J3KRW8 73 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 K7EMI3 77 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 PRRG2O14669 202 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 GFRALQ6UXV0 394 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 C5orf17Q8NAS9 161 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 DEFB104AQ8WTQ1 72 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 IGLC7A0M8Q6 106 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 TMEM178BH3BS89 294 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 GAGE1Q13065 139 aa9.95□□□□□ -0.82
CDH3-202ENST00000429102 RBPMS2Q6ZRY4 209 aaKnown RBP9.95□□□□□ -0.82
CDH3-202ENST00000429102 TM4SF5O14894 197 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 IGLV2-23P01705 113 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 IFI27P40305 119 aaPredicted RBP9.94□□□□□ -0.82
CDH3-202ENST00000429102 TMEM75Q8N9X5 138 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 CHODLQ9H9P2 273 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 IGHV2-26A0A0B4J1V2 119 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 LOXP28300 417 aaPredicted RBP9.94□□□□□ -0.82
CDH3-202ENST00000429102 KLRD1Q13241 179 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 SLC25A39Q9BZJ4 359 aaPredicted RBP9.94□□□□□ -0.82
CDH3-202ENST00000429102 MRPL27Q9P0M9 148 aaKnown RBP9.94□□□□□ -0.82
CDH3-202ENST00000429102 FAM90A27PA6NNH2 459 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 IGHV1-8P0DP01 117 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 PPP1R27Q86WC6 154 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 BPIFA4PQ86YQ2 179 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 TMEM186Q96B77 213 aa9.94□□□□□ -0.82
CDH3-202ENST00000429102 DOPEY2Q9Y3R5 2298 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 GAGE10A6NGK3 116 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 H3BUT2 72 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 AMN1Q8IY45 258 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 OR4F17Q8NGA8 305 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 AP5S1Q9NUS5 200 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 IGKV2-40A0A087WW87 121 aaPredicted RBP9.93□□□□□ -0.82
CDH3-202ENST00000429102 IGKV2D-40P01614 121 aaPredicted RBP9.93□□□□□ -0.82
CDH3-202ENST00000429102 HLA-DMBP28068 263 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 ABHD17AQ96GS6 310 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 THYN1Q9P016 225 aa9.93□□□□□ -0.82
CDH3-202ENST00000429102 GATA4P43694 442 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 TTTY13Q9BZ97 58 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 SIGLEC9Q9Y336 463 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 LOC105371242A0A075B767 164 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 NPIPB5A8MRT5 1133 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 RNASE6Q93091 150 aaKnown RBP9.92□□□□□ -0.82
CDH3-202ENST00000429102 A0A1B0GUT8 65 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 D6R8Y8 96 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 CT45A10P0DMU9 189 aa9.92□□□□□ -0.82
CDH3-202ENST00000429102 CSPG4Q6UVK1 2322 aa9.91□□□□□ -0.82
CDH3-202ENST00000429102 SAP30O75446 220 aa9.91□□□□□ -0.82
CDH3-202ENST00000429102 GOSR1O95249 250 aa9.91□□□□□ -0.82
CDH3-202ENST00000429102 FAM120AOSQ5T036 256 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms