RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SPRY3O43610 288 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 IGLV2-23P01705 113 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 RPL24P83731 157 aaKnown RBP8.51□□□□□ -1.05
USP54-204ENST00000422491 EXOC3-AS1Q8N2X6 119 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 OR10X1Q8NGY0 326 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 GTSF1LQ9H1H1 148 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 LOC389332A0A1B0GUA5 103 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 NKX2-8O15522 239 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 FCGR2BP31994 310 aaPredicted RBP8.51□□□□□ -1.05
USP54-204ENST00000422491 NMUP48645 174 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 OR4C13Q8NGP0 309 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 MAFAQ8NHW3 353 aaPredicted RBP8.51□□□□□ -1.05
USP54-204ENST00000422491 ZNF414Q96IQ9 312 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 C18orf15Q96N68 181 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 CCL13Q99616 98 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 SIT1Q9Y3P8 196 aa8.51□□□□□ -1.05
USP54-204ENST00000422491 DSPP15924 2871 aaKnown RBP8.51□□□□□ -1.05
USP54-204ENST00000422491 SMIM13P0DJ93 91 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 GATA4P43694 442 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 PSG3Q16557 428 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 PEAR1Q5VY43 1037 aaPredicted RBP8.5□□□□□ -1.05
USP54-204ENST00000422491 ZNF788Q6ZQV5 615 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 SIGMAR1Q99720 223 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 HBDP02042 147 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 CRIP1P50238 77 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 FXYD2P54710 66 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 FXYD7P58549 80 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 MRGPRG-AS1Q2M3A8 158 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 TM4SF20Q53R12 229 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 Q6AWC8 147 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 C9orf106Q8NAJ2 232 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 DEFB108BQ8NET1 73 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 TPSG1Q9NRR2 321 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 RNF7Q9UBF6 113 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 F11RQ9Y624 299 aaKnown RBP8.5□□□□□ -1.05
USP54-204ENST00000422491 CACNA1GO43497 2377 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 A0A1W2PNU3 283 aaPredicted RBP8.5□□□□□ -1.05
USP54-204ENST00000422491 CT45A10P0DMU9 189 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 SMAGPQ0VAQ4 97 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 HCP5Q6MZN7 132 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 PIFOQ8TCI5 191 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 PHLDA1Q8WV24 401 aaPredicted RBP8.5□□□□□ -1.05
USP54-204ENST00000422491 IFI27L1Q96BM0 104 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 ASCL2Q99929 193 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 VGLL1Q99990 258 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 TMEM14CQ9P0S9 112 aa8.5□□□□□ -1.05
USP54-204ENST00000422491 PLXNB1O43157 2135 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 BMI1P35226 326 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 DIAPH2-AS1Q14236 149 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 TMEM75Q8N9X5 138 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 PRELID3AQ96N28 172 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 ZNF71Q9NQZ8 489 aaPredicted RBP8.49□□□□□ -1.05
USP54-204ENST00000422491 LINC00312Q9Y6C7 94 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 FTH1P19P0C7X4 201 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 FAM104BQ5XKR9 115 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 FOXI2Q6ZQN5 318 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 AMN1Q8IY45 258 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 CLUHP3Q96NS8 147 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 TPPP3Q9BW30 176 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 HIGD1BQ9P298 99 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 DKK2Q9UBU2 259 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 HIGD1AQ9Y241 93 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 SLC25A15Q9Y619 301 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 CADP27708 2225 aa8.49□□□□□ -1.05
USP54-204ENST00000422491 PRRC2CQ9Y520 2896 aaKnown RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 SPENQ96T58 3664 aaKnown RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 WI2-2373I1.2A0A1W2PRP0 233 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 NDUFS7O75251 213 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 TNFRSF1AP19438 455 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 GCSHP23434 173 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 CD300EQ496F6 205 aaPredicted RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 ORMDL3Q8N138 153 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 BCL6BQ8N143 479 aaPredicted RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 FAM169BQ8N8A8 192 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 MUC3AQ02505 3323 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 IGKV2D-26A0A0A0MRZ7 120 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 IGHV3-21A0A0B4J1V1 117 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 TMEM213A2RRL7 107 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 GAGE12HA6NDE8 117 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 SLC25A17O43808 307 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 TDHQ8IZJ6 230 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 SLC25A39Q9BZJ4 359 aaPredicted RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 PLSCR4Q9NRQ2 329 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 TSSC4Q9Y5U2 329 aaPredicted RBP8.48□□□□□ -1.05
USP54-204ENST00000422491 ZFHX4Q86UP3 3567 aa8.48□□□□□ -1.05
USP54-204ENST00000422491 IGLV3-9A0A075B6K5 115 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 SERTM2A0A1B0GWG4 89 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 K7ERJ3 54 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 IGHG3P01860 377 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 RITA1Q96K30 269 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 SPANXB1Q9NS25 103 aaPredicted RBP8.47□□□□□ -1.05
USP54-204ENST00000422491 PSG8Q9UQ74 426 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 A0A1B0GV72 72 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 CCL3L1P16619 93 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 MRPL51Q4U2R6 128 aaKnown RBP8.47□□□□□ -1.05
USP54-204ENST00000422491 DHRS13Q6UX07 377 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 TMEM178AQ8NBL3 297 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 ATP6V0BQ99437 205 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 SPATA25Q9BR10 227 aa8.47□□□□□ -1.05
USP54-204ENST00000422491 GLRXP35754 106 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms