RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GPR183P32249 361 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 PSG3Q16557 428 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 PRR27Q6MZM9 219 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 UFSP1Q6NVU6 142 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 SIGLEC15Q6ZMC9 328 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 PGLYRP4Q96LB8 373 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 CNFNQ9BYD5 112 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 NGBQ9NPG2 151 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 LY6LH3BQJ8 138 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 H3BRM9 83 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 SLC25A17O43808 307 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 NUDT3O95989 172 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 CCL3L1P16619 93 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 COTL1Q14019 142 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 PPP1R27Q86WC6 154 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 BPIFA4PQ86YQ2 179 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 BOD1L2Q8IYS8 172 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 RAB1BQ9H0U4 201 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 CST9LQ9H4G1 147 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM160Q9NX00 188 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 SH3BGRL2Q9UJC5 107 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 EYSQ5T1H1 3165 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 WDFY3Q8IZQ1 3526 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 PSG1P11464 419 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 ORM2P19652 201 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 ARF6P62330 175 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 LPAL2Q16609 132 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 OCIAD2Q56VL3 154 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 C10orf55Q5SWW7 151 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 SMIM15Q7Z3B0 74 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 OR4X2Q8NGF9 303 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 RNF125Q96EQ8 232 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 C1orf43Q9BWL3 253 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 A0A096LNJ9 63 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 hDV102S1A0JD36 115 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 IGKV1-17P01599 117 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 HTR1DP28221 377 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 FCGR2BP31994 310 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 KIR3DS1Q14943 382 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 LINC00173Q6ZV60 143 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 BLNKQ8WV28 456 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 ZC2HC1AQ96GY0 325 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 RITA1Q96K30 269 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 PSMG3-AS1Q96PY0 264 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 COL25A1Q9BXS0 654 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 ZNRD1Q9P1U0 126 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 HIGD1BQ9P298 99 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 CTSZQ9UBR2 303 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 VCANP13611 3396 aa4.54□□□□□ -1.68
CCDC88A-203ENST00000412148 CUL9Q8IWT3 2517 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 IGHV1-3A0A0C4DH29 117 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 MUC21A0A0G2JKD1 596 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 MUC21A0A140T8X8 626 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 A6NDN8 102 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 K7ERU9 68 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 S100A7P31151 101 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 PSG9Q00887 426 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 HSD52Q0P140 79 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 PLGLAQ15195 96 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 VAMP3Q15836 100 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM97Q5BJF2 176 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 MUC21Q5SSG8 566 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM104BQ5XKR9 115 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 DEFB108BQ8NET1 73 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 NPBQ8NG41 125 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 ZNF414Q96IQ9 312 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 TPSG1Q9NRR2 321 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 PSG8Q9UQ74 426 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 C7orf71A4D174 169 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 C9orf118A6NHY6 69 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 C16orf97H3BN30 126 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 BUB1B-PAK6H3BSN5 160 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 NDUFA3O95167 84 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 DIAPH2-AS1Q14236 149 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 RUSC1-AS1Q66K80 236 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 GTF2H5Q6ZYL4 71 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 RNASE6Q93091 150 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 RASL11BQ9BPW5 248 aa4.53□□□□□ -1.68
CCDC88A-203ENST00000412148 NPIPB5A8MRT5 1133 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 K7EIM0 57 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 ARMS2P0C7Q2 107 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 SMIM17P0DL12 118 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 CRIP1P50238 77 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 FA2HQ7L5A8 372 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 ORMDL3Q8N138 153 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF491Q8N8L2 437 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 OR5A1Q8NGJ0 315 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 SRSF12Q8WXF0 261 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 RABAC1Q9UI14 185 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 OR2T8A6NH00 312 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 HBDP02042 147 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 IGLC6P0CF74 106 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 SRSF1Q07955 248 aaKnown RBP eCLIP4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 ADAMTSL5Q6ZMM2 481 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 GOLT1AQ6ZVE7 132 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 LY6G5BQ8NDX9 201 aa4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 RALYQ9UKM9 306 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-203ENST00000412148 GAGE12BA1L429 117 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 CBY3A6NI87 242 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 PLAUP00749 431 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms