RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 HIST1H2BOP23527 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BBP33778 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 PROK1P58294 105 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 FAM3BP58499 235 aaPredicted RBP10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BDP58876 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 PLP1P60201 277 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BCP62807 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 SLC35B1P78383 322 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 CFHR3Q02985 330 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 ZNF90Q03938 601 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST2H2BEQ16778 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.44□□□□□ -0.74
LIMS1-204ENST00000409441 C10orf99Q6UWK7 81 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 PATE2Q6UY27 113 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 TTC9CQ8N5M4 171 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 KLHDC1Q8N7A1 406 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 NECAP1Q8NC96 275 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 OR5AU1Q8NGC0 362 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BHQ93079 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BNQ99877 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BMQ99879 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 FBN1P35555 2871 aaKnown RBP10.44□□□□□ -0.74
LIMS1-204ENST00000409441 ZNF98A6NK75 572 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 PHOX2AO14813 284 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 SMIM6P0DI80 62 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 MEOX2P50222 304 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 UBE2L3P68036 154 aaKnown RBP10.44□□□□□ -0.74
LIMS1-204ENST00000409441 OR10G8Q8NGN5 311 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 PAXXQ9BUH6 204 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 OR51M1Q9H341 326 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 ZNF355PQ9NSJ1 428 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 TRAV9-1A0A075B6T8 112 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 HELTA6NFD8 242 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 TEX38Q6PEX7 206 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 OCC1Q8TAD7 63 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 C12orf57Q99622 126 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 ELOVL1Q9BW60 279 aa10.43□□□□□ -0.74
LIMS1-204ENST00000409441 A0A1W2PPQ1 181 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 NPIPB5A8MRT5 1133 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 GGTLC3B5MD39 225 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 I3L2K1 104 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 IGLV1-40P01703 118 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 IGHV3-48P01763 117 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 IGHG4P01861 327 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 S100A9P06702 114 aaKnown RBP10.42□□□□□ -0.74
LIMS1-204ENST00000409441 TRGC1P0CF51 173 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 CRYBB3P26998 211 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 CDX1P47902 265 aaPredicted RBP10.42□□□□□ -0.74
LIMS1-204ENST00000409441 NDUFA6P56556 154 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 FAM110DQ8TAY7 271 aaPredicted RBP10.42□□□□□ -0.74
LIMS1-204ENST00000409441 WIPF2Q8TF74 440 aaPredicted RBP10.42□□□□□ -0.74
LIMS1-204ENST00000409441 FRZBQ92765 325 aa10.42□□□□□ -0.74
LIMS1-204ENST00000409441 TRAV5A0A0B4J249 113 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 PGPEP1LA6NFU8 196 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 HYPMO75409 117 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 FABP1P07148 127 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 OR10J4P0C629 311 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 GNG4P50150 75 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 TAS2R60P59551 318 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 SUMO1P63165 101 aaKnown RBP10.41□□□□□ -0.74
LIMS1-204ENST00000409441 MORN5Q5VZ52 161 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 C19orf35Q6ZS72 473 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 LINC00305Q7Z4B0 112 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 MS4A10Q96PG2 267 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 KLK15Q9H2R5 256 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 DMRT1Q9Y5R6 373 aa10.41□□□□□ -0.74
LIMS1-204ENST00000409441 PF4V1P10720 104 aa10.4□□□□□ -0.74
LIMS1-204ENST00000409441 FOXE3Q13461 319 aa10.4□□□□□ -0.74
LIMS1-204ENST00000409441 CENPWQ5EE01 88 aa10.4□□□□□ -0.74
LIMS1-204ENST00000409441 TMEM190Q8WZ59 177 aa10.4□□□□□ -0.74
LIMS1-204ENST00000409441 FXYD5Q96DB9 178 aa10.4□□□□□ -0.74
LIMS1-204ENST00000409441 AURKAIP1Q9NWT8 199 aaPredicted RBP10.4□□□□□ -0.74
LIMS1-204ENST00000409441 K7EN84 100 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 ELANEP08246 267 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 IGLC1P0CG04 106 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 ORM2P19652 201 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 PSMB8P28062 276 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 RAB9AP51151 201 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 KRTAP10-3P60369 221 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 TIGITQ495A1 244 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 TCTEX1D4Q5JR98 221 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 ACTL10Q5JWF8 245 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 LCNL1Q6ZST4 164 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 C11orf44Q8N8P7 122 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 OR4X2Q8NGF9 303 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 OR1B1Q8NGR6 318 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 IL36BQ9NZH7 164 aa10.4□□□□□ -0.75
LIMS1-204ENST00000409441 H3BUA1 57 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 BRI3O95415 125 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 PYYP10082 97 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 CD28P10747 220 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 WFDC12Q8WWY7 111 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 FANCD2OSQ96PS1 177 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 MDFIQ99750 246 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 OSTCQ9NRP0 149 aa10.39□□□□□ -0.75
LIMS1-204ENST00000409441 COL6A5A8TX70 2615 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 K7EIM0 57 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 GCGP01275 180 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 TRGV3P03979 118 aa10.38□□□□□ -0.75
LIMS1-204ENST00000409441 RPLP1P05386 114 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms