RNA–Protein interactions for RNA: ENST00000405807.8

COL4A3BP-204, Transcript of collagen type IV alpha 3 binding protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A3BP, Length 2,843 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-204ENST00000405807 UPK2O00526 184 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 CGB3P0DN86 165 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 CGB7P0DN87 165 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 FAM159AQ6UWV7 190 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 A1L4Q6 167 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 OR2J3O76001 311 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 OR9G1Q8NH87 305 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 LINC00479Q96M42 142 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 TMEM133Q9H2Q1 129 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 GUSBP1Q15486 140 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 C17orf58Q2M2W7 97 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 UTF1Q5T230 341 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 GDF5OSQ5U4N7 250 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 CNEP1R1Q8N9A8 125 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 H1FXQ92522 213 aaKnown RBP13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 SNRNP40Q96DI7 357 aaKnown RBP13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 SLC25A2Q9BXI2 301 aa13.03□□□□□ -0.32
COL4A3BP-204ENST00000405807 AHCTF1Q8WYP5 2266 aa13.02□□□□□ -0.32
COL4A3BP-204ENST00000405807 THBDP07204 575 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM78Q5T7P6 136 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 OR5AN1Q8NGI8 311 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 OR1L8Q8NGR8 309 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 FAM167A-AS1Q96KT0 104 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 TEX50A0A1B0GTY4 177 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 RHODO00212 210 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 CT45A6P0DMU7 189 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 CT45A5P0DMU8 189 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 CT45A7P0DMV0 189 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 MLANAQ16655 118 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM116Q8NCL8 245 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 DUX5Q96PT3 197 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 KIR2DL4Q99706 377 aa13.02□□□□□ -0.33
COL4A3BP-204ENST00000405807 TRAV5A0A0B4J249 113 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 F8WDY8 70 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 CD69Q07108 199 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 AMTNQ6UX39 209 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 DNAJC30Q96LL9 226 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 MAP1LC3CQ9BXW4 147 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 MAP1LC3AQ9H492 121 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 ATP5L2Q7Z4Y8 100 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM126AQ9H061 195 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 SPANXA1Q9NS26 97 aa13.01□□□□□ -0.33
COL4A3BP-204ENST00000405807 PEX7O00628 323 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 RNASE2P10153 161 aaKnown RBP13□□□□□ -0.33
COL4A3BP-204ENST00000405807 SRD5A1P18405 259 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM178AQ8NBL3 297 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 PRO0461Q9UI25 63 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 K7ERJ3 54 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 TTC32Q5I0X7 151 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 ZNF714Q96N38 554 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 PAXXQ9BUH6 204 aa13□□□□□ -0.33
COL4A3BP-204ENST00000405807 URB1O60287 2271 aaKnown RBP13□□□□□ -0.33
COL4A3BP-204ENST00000405807 LOC107984640A0A0U1RRK4 108 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 HIGD1CA8MV81 97 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 FCN3O75636 299 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 CAMPP49913 170 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 ASPHD1Q5U4P2 390 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 MORN5Q5VZ52 161 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 ZNF329Q86UD4 541 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 TEX45Q8NA69 505 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 OR4X2Q8NGF9 303 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 URB1-AS1Q96HZ7 61 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 IGHV1-24A0A0C4DH33 117 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 IGLV1-44P01699 117 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 IGHG4P01861 327 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 RPL7P18124 248 aaKnown RBP12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 SOX21Q9Y651 276 aaPredicted RBP12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 MED13Q9UHV7 2174 aa12.99□□□□□ -0.33
COL4A3BP-204ENST00000405807 COX7A2P2O60397 106 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 GATA4P43694 442 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 OR1L4Q8NGR5 311 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM8BA6NDV4 472 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 SRRM4A7MD48 611 aaKnown RBP12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 DLL1O00548 723 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 SLC25A5P05141 298 aaKnown RBP12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 IFITM1P13164 125 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 GAGE2BQ13066 116 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 GAGE2EQ4V326 116 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 MOGAT3Q86VF5 341 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 C3orf56Q8N813 242 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 OR9G4Q8NGQ1 327 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 GAGE2DQ9UEU5 116 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 IGHV1-18A0A0C4DH31 117 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 F5H768 121 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 CHEK1O14757 476 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 IGKV1-16P04430 117 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 PYYP10082 97 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 C10orf113Q5VZT2 155 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 NFE4Q86UQ8 179 aa12.98□□□□□ -0.33
COL4A3BP-204ENST00000405807 COL27A1Q8IZC6 1860 aaPredicted RBP12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 ERHP84090 104 aaKnown RBP12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 A0A1B0GXF2 115 aa12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 A0A1W2PNU3 283 aaPredicted RBP12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 E9PLD3 99 aa12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 LAMA5O15230 3695 aa12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 LHBP01229 141 aa12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 COL25A1Q9BXS0 654 aaPredicted RBP12.97□□□□□ -0.33
COL4A3BP-204ENST00000405807 TMEM213A2RRL7 107 aa12.96□□□□□ -0.33
COL4A3BP-204ENST00000405807 TNFRSF6BO95407 300 aa12.96□□□□□ -0.33
COL4A3BP-204ENST00000405807 LINC00694P0DN24 101 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms