RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PRR20CP86479 221 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 PRR20DP86480 221 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 PRR20BP86481 221 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 PRR20AP86496 221 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 VWC2Q2TAL6 325 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 MUC21Q5SSG8 566 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 ZNF329Q86UD4 541 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 NPFFR1Q9GZQ6 430 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 CDC42EP3Q9UKI2 254 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 WNK1Q9H4A3 2382 aa11.21□□□□□ -0.62
SCAF4-202ENST00000399804 IGHV4-39P01824 125 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 PAX8Q06710 450 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 CDSNQ15517 529 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 AP1S3Q96PC3 154 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 COL6A3P12111 3177 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 TRAV8-1A0A0A6YYK1 113 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 IGHV4-61A0A0C4DH41 118 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 HIST1H1AQ02539 215 aaPredicted RBP11.2□□□□□ -0.62
SCAF4-202ENST00000399804 RPP21Q9H633 154 aaKnown RBP11.2□□□□□ -0.62
SCAF4-202ENST00000399804 LSM4Q9Y4Z0 139 aaKnown RBP11.2□□□□□ -0.62
SCAF4-202ENST00000399804 CYB5R2Q6BCY4 276 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 TCF24Q7RTU0 167 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 PSG8Q9UQ74 426 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 ZNF462Q96JM2 2506 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 C9JCJ5 164 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 GCGP01275 180 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 PRSS22Q9GZN4 317 aa11.2□□□□□ -0.62
SCAF4-202ENST00000399804 LOC389332A0A1B0GUA5 103 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 E7EUB6 86 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 C19orf84I3L1E1 186 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 ZNF292O60281 2723 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 SSBP2P81877 361 aaPredicted RBP11.19□□□□□ -0.62
SCAF4-202ENST00000399804 NRGNQ92686 78 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 SELENOKQ9Y6D0 94 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 TRBV9A0A0B4J1U6 114 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 IGKV3-20P01619 116 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 EBLN2Q6P2I7 272 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 RBPMS2Q6ZRY4 209 aaKnown RBP11.19□□□□□ -0.62
SCAF4-202ENST00000399804 ZNF295-AS1Q8N0V1 137 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 LINC01356Q8N9X3 169 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 LINC00574Q9H8X3 128 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 SPTBN5Q9NRC6 3674 aaKnown RBP11.19□□□□□ -0.62
SCAF4-202ENST00000399804 M0R3E3 92 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 TCRAP04437 139 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 ZFP36P26651 326 aaKnown RBP11.19□□□□□ -0.62
SCAF4-202ENST00000399804 HBBP68871 147 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 FAM120AOSQ5T036 256 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 VN1R17PQ8TDU5 208 aa11.19□□□□□ -0.62
SCAF4-202ENST00000399804 FOSL1P15407 271 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 C14orf144Q96I85 54 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 SETD2Q9BYW2 2564 aaPredicted RBP11.18□□□□□ -0.62
SCAF4-202ENST00000399804 GPX1P07203 203 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 Q8N7P7 452 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 TMEM116Q8NCL8 245 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 YAE1D1Q9NRH1 226 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 IFITM10A6NMD0 228 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 HOXB4P17483 251 aaPredicted RBP11.18□□□□□ -0.62
SCAF4-202ENST00000399804 TMEM183AQ8IXX5 376 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 ST6GALNAC6Q969X2 333 aa11.18□□□□□ -0.62
SCAF4-202ENST00000399804 TOMM40O96008 361 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 PKIAP61925 76 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 HIST3H2BBQ8N257 126 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 NUDT10Q8NFP7 164 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 NUDT11Q96G61 164 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 EIF4EBP1Q13541 118 aaPredicted RBP11.17□□□□□ -0.62
SCAF4-202ENST00000399804 OR5AL1P0C617 328 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 IGLC1P0CG04 106 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 CKS2P33552 79 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 KLHDC1Q8N7A1 406 aa11.17□□□□□ -0.62
SCAF4-202ENST00000399804 PCSK5Q92824 1860 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 A0A1B0GUT8 65 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 IZUMO1RA6ND01 250 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 GGTLC3B5MD39 225 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 NDPQ00604 133 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 IGFL4Q6B9Z1 124 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 ZNF841Q6ZN19 808 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 HIVEP2P31629 2446 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 IGHV4-30-2A0A087WSY4 118 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 RPS20P60866 119 aaKnown RBP11.16□□□□□ -0.62
SCAF4-202ENST00000399804 FOXL1Q12952 345 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 CIARTQ8N365 385 aaPredicted RBP11.16□□□□□ -0.62
SCAF4-202ENST00000399804 ZFP30Q9Y2G7 519 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 TRAV9-1A0A075B6T8 112 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 PLA2G5P39877 138 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 TMEM183BQ1AE95 376 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 TMEM170AQ8WVE7 144 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 TBX15Q96SF7 602 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 SHANK2-AS3Q9BTD1 123 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 HCFC1P51610 2035 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 MGAQ8IWI9 3026 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 MGPP08493 103 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 Q5PR19 223 aa11.16□□□□□ -0.62
SCAF4-202ENST00000399804 SSBP4Q9BWG4 385 aaPredicted RBP11.16□□□□□ -0.62
SCAF4-202ENST00000399804 SLC50A1Q9BRV3 221 aa11.15□□□□□ -0.62
SCAF4-202ENST00000399804 PAM16Q9Y3D7 125 aa11.15□□□□□ -0.62
SCAF4-202ENST00000399804 POLQO75417 2590 aa11.15□□□□□ -0.62
SCAF4-202ENST00000399804 IGKV2-40A0A087WW87 121 aaPredicted RBP11.15□□□□□ -0.62
SCAF4-202ENST00000399804 IGKV2D-40P01614 121 aaPredicted RBP11.15□□□□□ -0.62
SCAF4-202ENST00000399804 IGLV2-23P01705 113 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms