RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FXYD2P54710 66 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 PSMG4Q5JS54 123 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 Q6AWC8 147 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 GGNQ86UU5 652 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 OR4C13Q8NGP0 309 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 WIPF2Q8TF74 440 aaPredicted RBP7.58□□□□□ -1.2
COL28A1-201ENST00000399429 FGF23Q9GZV9 251 aaPredicted RBP7.58□□□□□ -1.2
COL28A1-201ENST00000399429 YLPM1P49750 1951 aaKnown RBP7.58□□□□□ -1.2
COL28A1-201ENST00000399429 IGLV3-12A0A075B6K2 115 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 TRAV40A0A0B4J280 105 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 NPIPB6E9PJ23 425 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 NRN1LQ496H8 165 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 Q6ZR03 302 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 ONECUT1Q9UBC0 465 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 FOXA2Q9Y261 457 aaPredicted RBP7.58□□□□□ -1.2
COL28A1-201ENST00000399429 ACACAQ13085 2346 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 SPAARA0A1B0GVQ0 90 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM213A2RRL7 107 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 NKX2-8O15522 239 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 JMJD8Q96S16 334 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 VCX2Q9H322 139 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 C5orf67F2Z3F1 127 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 IGLV2-14P01704 120 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 CCL8P80075 99 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE5Q13069 117 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 GAGE6Q13070 117 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 RNFT1Q5M7Z0 435 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 LINC01545Q5VT33 79 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 INSIG2Q9Y5U4 225 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 PRR20EP86478 221 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 PRR20CP86479 221 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 PRR20DP86480 221 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 PRR20BP86481 221 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 PRR20AP86496 221 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 OTORQ9NRC9 128 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 A0A1W2PR77 199 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 ZNF815PA8K554 130 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 NPIPB5A8MRT5 1133 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 TSPAN13O95857 204 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 LGALS9BQ3B8N2 356 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 GDF5OSQ5U4N7 250 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 LGALS9CQ6DKI2 356 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 COLCA1Q6ZS62 124 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 SCGB3A1Q96QR1 104 aa7.57□□□□□ -1.2
COL28A1-201ENST00000399429 MRPL20Q9BYC9 149 aaKnown RBP7.57□□□□□ -1.2
COL28A1-201ENST00000399429 SLC25A2Q9BXI2 301 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 IGKV1-16P04430 117 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM170BQ5T4T1 132 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 SIGLEC8Q9NYZ4 499 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 IGHV3OR16-8A0A075B7F1 116 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM8BA6NDV4 472 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 OSR1Q8TAX0 266 aaPredicted RBP7.56□□□□□ -1.2
COL28A1-201ENST00000399429 SPAG8Q99932 426 aaPredicted RBP7.56□□□□□ -1.2
COL28A1-201ENST00000399429 NGBQ9NPG2 151 aa7.56□□□□□ -1.2
COL28A1-201ENST00000399429 C21orf140B9A014 251 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 IGHV4-39P01824 125 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 CFAP161Q6P656 301 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 SVIPQ8NHG7 77 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM158Q8WZ71 300 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 IMMP1LQ96LU5 166 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 MORN5Q5VZ52 161 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 FAM214BQ7L5A3 538 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 C10orf126Q8N4M7 172 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 FAM216BQ8N7L0 139 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 C20orf78Q9BR46 151 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 ADAMTS9Q9P2N4 1935 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 PRR14LQ5THK1 2151 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 LINC01549A6NIU2 74 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 TMEM155Q4W5P6 130 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 CEND1Q8N111 149 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 NXT2Q9NPJ8 142 aaKnown RBP7.55□□□□□ -1.2
COL28A1-201ENST00000399429 RNASE2P10153 161 aaKnown RBP7.55□□□□□ -1.2
COL28A1-201ENST00000399429 C1orf53Q5VUE5 145 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 CCDC144NLQ6NUI1 221 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 FOXI2Q6ZQN5 318 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 C8orf86Q6ZUL3 223 aa7.55□□□□□ -1.2
COL28A1-201ENST00000399429 ZNF503-AS2A6NEH8 195 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 IQCF6A8MYZ5 107 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 C12orf74Q32Q52 190 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 BOD1L2Q8IYS8 172 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 CD177Q8N6Q3 437 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 ZNF784Q8NCA9 323 aaPredicted RBP7.54□□□□□ -1.2
COL28A1-201ENST00000399429 PCNX1Q96RV3 2341 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 C9orf172C9J069 976 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 COX6CP09669 75 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 WDR86Q86TI4 376 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 DEFB104AQ8WTQ1 72 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 RNF183Q96D59 192 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 PINLYPA6NC86 204 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 PRSS29PA6NIE9 313 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 IGLL5B9A064 214 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 SIVA1O15304 175 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 LTAP01374 205 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 LGALS3P17931 250 aaKnown RBP7.54□□□□□ -1.2
COL28A1-201ENST00000399429 Q86TA4 180 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 NEU4Q8WWR8 484 aaPredicted RBP7.54□□□□□ -1.2
COL28A1-201ENST00000399429 IGF2BP2-AS1Q96M15 143 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 GFRA4Q9GZZ7 299 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 ZNRD1Q9P1U0 126 aa7.54□□□□□ -1.2
COL28A1-201ENST00000399429 TRBV25-1A0A075B6N4 114 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms