RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 AVPP01185 164 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 HIST1H1EP10412 219 aaKnown RBP11.77□□□□□ -0.52
GPC3-202ENST00000394299 COL8A1P27658 744 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 ADMP35318 185 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 IER3P46695 156 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 UBE2G1P62253 170 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 PITPNC1Q9UKF7 332 aa11.77□□□□□ -0.52
GPC3-202ENST00000394299 TCRAP04437 139 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 AMY1AP04745 511 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 LY6EQ16553 131 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 TMEM183BQ1AE95 376 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 PYY3Q5JQD4 70 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 MAPK1IP1LQ8NDC0 245 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 NUDT10Q8NFP7 164 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 NUDT11Q96G61 164 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 C7orf69Q9H7B7 122 aa11.77□□□□□ -0.53
GPC3-202ENST00000394299 UBR5O95071 2799 aaPredicted RBP11.77□□□□□ -0.53
GPC3-202ENST00000394299 YPEL3P61236 119 aaPredicted RBP11.76□□□□□ -0.53
GPC3-202ENST00000394299 C15orf32Q32M92 178 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 C5orf56Q8N8D9 126 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 THYN1Q9P016 225 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 PRR31Q5SQ13 230 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 C5orf17Q8NAS9 161 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 TMEM68Q96MH6 324 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 TMEM14CQ9P0S9 112 aa11.76□□□□□ -0.53
GPC3-202ENST00000394299 GRIFINA4D1Z8 144 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 MRPS12O15235 138 aaKnown RBP11.75□□□□□ -0.53
GPC3-202ENST00000394299 S100A2P29034 98 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 GPR183P32249 361 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 RHOGP84095 191 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 MRPL54Q6P161 138 aaKnown RBP11.75□□□□□ -0.53
GPC3-202ENST00000394299 GOLT1AQ6ZVE7 132 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 BPIFA4PQ86YQ2 179 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 ZNF414Q96IQ9 312 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 BTF3L4Q96K17 158 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 HIST1H2BLQ99880 126 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 ATG101Q9BSB4 218 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 KLF12Q9Y4X4 402 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 PTPN13Q12923 2485 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 TRBV19A0A075B6N1 114 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 TRAV30A0A087WSZ9 112 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 NDUFS8O00217 210 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 NUPR1O60356 82 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 CLEC3BP05452 202 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 IGLC2P0DOY2 106 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 C9orf152Q5JTZ5 239 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 TMEM183AQ8IXX5 376 aa11.75□□□□□ -0.53
GPC3-202ENST00000394299 FAM110DQ8TAY7 271 aaPredicted RBP11.75□□□□□ -0.53
GPC3-202ENST00000394299 M0R3E3 92 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 MSMBP08118 114 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 TMEM256Q8N2U0 113 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 HIF1ANQ9NWT6 349 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 ABCA12Q86UK0 2595 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 SNURFLB1AK76 121 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 KRTAP10-9P60411 292 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 IGFL4Q6B9Z1 124 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 CIARTQ8N365 385 aaPredicted RBP11.74□□□□□ -0.53
GPC3-202ENST00000394299 GPR82Q96P67 336 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 TCEAL7Q9BRU2 100 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 MRPL18Q9H0U6 180 aaKnown RBP11.74□□□□□ -0.53
GPC3-202ENST00000394299 OTORQ9NRC9 128 aa11.74□□□□□ -0.53
GPC3-202ENST00000394299 NBPF19A0A087WUL8 3843 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 ANKRD17O75179 2603 aaKnown RBP11.73□□□□□ -0.53
GPC3-202ENST00000394299 SMIM27A0A1W2PRY6 76 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 KIAA1644Q3SXP7 199 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 SIGLEC15Q6ZMC9 328 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 OR4F17Q8NGA8 305 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 MLST8Q9BVC4 326 aa11.73□□□□□ -0.53
GPC3-202ENST00000394299 IGLV2-11P01706 119 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 AMBPP02760 352 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 CLEC19AQ6UXS0 136 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 PRNTQ86SH4 94 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 CMTM2Q8TAZ6 248 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 ZNF502Q8TBZ5 544 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 ZNF48Q96MX3 618 aaPredicted RBP11.72□□□□□ -0.53
GPC3-202ENST00000394299 GOSR1O95249 250 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 Q6ZS46 218 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 MBD6Q96DN6 1003 aa11.72□□□□□ -0.53
GPC3-202ENST00000394299 PACRGQ96M98 296 aaPredicted RBP11.72□□□□□ -0.53
GPC3-202ENST00000394299 IGHV3OR16-13A0A075B7E8 117 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 IGHV3-74A0A0B4J1X5 117 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 IGHV3-66A0A0C4DH42 116 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 H3BUX3 64 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 LTAP01374 205 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 RAB4BP61018 213 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 CCDC140Q96MF4 163 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 GNB4Q9HAV0 340 aa11.71□□□□□ -0.53
GPC3-202ENST00000394299 TRBV9A0A0B4J1U6 114 aa11.71□□□□□ -0.54
GPC3-202ENST00000394299 COA6Q5JTJ3 125 aaKnown RBP11.71□□□□□ -0.54
GPC3-202ENST00000394299 MEGF9Q9H1U4 602 aa11.71□□□□□ -0.54
GPC3-202ENST00000394299 MOB4Q9Y3A3 225 aa11.71□□□□□ -0.54
GPC3-202ENST00000394299 ZNF785A8K8V0 405 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 F2Z2F3 143 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 COX6B1P14854 86 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 TOMM20LQ6UXN7 152 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 FMC1Q96HJ9 113 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 NOL4LQ96MY1 436 aaPredicted RBP11.7□□□□□ -0.54
GPC3-202ENST00000394299 TP53TG3Q9ULZ0 132 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 SMAD5-AS1Q9Y6J3 95 aa11.7□□□□□ -0.54
GPC3-202ENST00000394299 TRAV9-1A0A075B6T8 112 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms