RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 EFEMP2O95967 443 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 A0A1W2PPM0 123 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 HRKO00198 91 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 IFI6P09912 130 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 PRO1854Q9UHT4 67 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 LY96Q9Y6Y9 160 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 A0A0G2JMZ2 1700 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 LRRC37A2A6NM11 1700 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 LRRC37AA6NMS7 1700 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 C2CD4DB7Z1M9 353 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 CRYBA4P53673 196 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 PAX8Q06710 450 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 TMEM158Q8WZ71 300 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 FAM60AQ9NP50 221 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 DMRTC2Q8IXT2 367 aaPredicted RBP11.17□□□□□ -0.62
USP49-203ENST00000394253 C18orf12Q96KH6 178 aa11.17□□□□□ -0.62
USP49-203ENST00000394253 K7ERS5 55 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 APOBEC3AP31941 199 aaPredicted RBP11.16□□□□□ -0.62
USP49-203ENST00000394253 PYY3Q5JQD4 70 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 Q6ZS52 159 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 SELENOKQ9Y6D0 94 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 WNT2P09544 360 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 LINC00477Q96M19 166 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 MORN5Q5VZ52 161 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 STPG4Q8N801 248 aa11.16□□□□□ -0.62
USP49-203ENST00000394253 MBNL3Q9NUK0 354 aaKnown RBP11.16□□□□□ -0.62
USP49-203ENST00000394253 TRGV1A0A0A0MS02 117 aa11.15□□□□□ -0.62
USP49-203ENST00000394253 NDUFS6O75380 124 aaKnown RBP11.15□□□□□ -0.62
USP49-203ENST00000394253 SPANXB1Q9NS25 103 aaPredicted RBP11.15□□□□□ -0.62
USP49-203ENST00000394253 ZNF138P52744 262 aa11.15□□□□□ -0.62
USP49-203ENST00000394253 RTBDNQ9BSG5 229 aaPredicted RBP11.15□□□□□ -0.62
USP49-203ENST00000394253 FAM168AQ92567 244 aa11.15□□□□□ -0.62
USP49-203ENST00000394253 ETDBQ3ZM63 59 aa11.15□□□□□ -0.62
USP49-203ENST00000394253 Q6ZT83 130 aa11.15□□□□□ -0.62
USP49-203ENST00000394253 NEU4Q8WWR8 484 aaPredicted RBP11.15□□□□□ -0.62
USP49-203ENST00000394253 SRRM4A7MD48 611 aaKnown RBP11.15□□□□□ -0.63
USP49-203ENST00000394253 LINC01545Q5VT33 79 aa11.15□□□□□ -0.63
USP49-203ENST00000394253 FNDC10F2Z333 226 aa11.15□□□□□ -0.63
USP49-203ENST00000394253 YPEL1O60688 119 aa11.15□□□□□ -0.63
USP49-203ENST00000394253 BVES-AS1Q5T3Y7 98 aa11.15□□□□□ -0.63
USP49-203ENST00000394253 YPEL2Q96QA6 119 aa11.15□□□□□ -0.63
USP49-203ENST00000394253 F8P00451 2351 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 IL17RELQ6ZVW7 336 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 LIMS2Q7Z4I7 341 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 COLCA2A8K830 154 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 PDE6HQ13956 83 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 NRN1LQ496H8 165 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 FAM104BQ5XKR9 115 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 CARD19Q96LW7 228 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 RAMP3O60896 148 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 S4R3C0 116 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 NRXN3Q9Y4C0 1643 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 C17orf98A8MV24 154 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 LCN12Q6JVE5 192 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 LYPD1Q8N2G4 141 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 V9GYY9 64 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 IGLV1-36A0A0B4J1U3 117 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 C3orf79P0CE67 100 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 C20orf144Q9BQM9 153 aa11.14□□□□□ -0.63
USP49-203ENST00000394253 TRBV7-1A0A0A6YYK4 115 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 RHODO00212 210 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 SAA2-SAA4A0A096LPE2 208 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 TAX1BP3O14907 124 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 SAA2P0DJI9 122 aaPredicted RBP11.13□□□□□ -0.63
USP49-203ENST00000394253 LCNL1Q6ZST4 164 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 A0A1W2PR77 199 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 CDKN1BP46527 198 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 ZNF474Q6S9Z5 364 aaPredicted RBP11.13□□□□□ -0.63
USP49-203ENST00000394253 SPSB3Q6PJ21 355 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 CEND1Q8N111 149 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 CXCL1P09341 107 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 GAS1P54826 345 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 LINC01551Q86U37 167 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 MYEOVQ96EZ4 313 aa11.13□□□□□ -0.63
USP49-203ENST00000394253 TRPT1Q86TN4 253 aaKnown RBP11.13□□□□□ -0.63
USP49-203ENST00000394253 KIF26AQ9ULI4 1882 aaPredicted RBP11.12□□□□□ -0.63
USP49-203ENST00000394253 IGHV1OR15-9A0A0B4J2B8 117 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 VSIRQ9H7M9 311 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 IGHV1-45A0A0A0MS14 117 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 RNF222A6NCQ9 220 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 PRSS22Q9GZN4 317 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 LIME1Q9H400 295 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 UBE2E2Q96LR5 201 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 SCRT2Q9NQ03 307 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 ZNF319Q9P2F9 582 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 GREM1O60565 184 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 ZNF664Q8N3J9 261 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 EREGO14944 169 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 PPIFP30405 207 aaKnown RBP11.12□□□□□ -0.63
USP49-203ENST00000394253 LRP5O75197 1615 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 PRCDQ00LT1 54 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 PRB3Q04118 309 aaPredicted RBP11.12□□□□□ -0.63
USP49-203ENST00000394253 ZNF362Q5T0B9 420 aaPredicted RBP11.12□□□□□ -0.63
USP49-203ENST00000394253 MUSTN1Q8IVN3 82 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 C14orf132Q9NPU4 83 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 C12orf77C9JDV5 145 aa11.12□□□□□ -0.63
USP49-203ENST00000394253 PYYP10082 97 aa11.11□□□□□ -0.63
USP49-203ENST00000394253 ZNF831Q5JPB2 1677 aa11.11□□□□□ -0.63
USP49-203ENST00000394253 LYZL1Q6UWQ5 148 aa11.11□□□□□ -0.63
USP49-203ENST00000394253 C2CD3Q4AC94 2353 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms