RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LYZL1Q6UWQ5 148 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 C9orf139Q6ZV77 190 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 PLAC1Q9HBJ0 212 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 TRAV25A0A0B4J276 109 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 AHDC1Q5TGY3 1603 aaPredicted RBP9.63□□□□□ -0.87
VPS13A-205ENST00000376636 FCN3O75636 299 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 ADAMTSL3P82987 1691 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 LINC01590Q5TEZ4 76 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 C1orf53Q5VUE5 145 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 REPIN1Q9BWE0 567 aaKnown RBP9.63□□□□□ -0.87
VPS13A-205ENST00000376636 C17orf100A8MU93 164 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 TCF15Q12870 199 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 SLAQ13239 276 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 A0A1B0GTI1 187 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 ZC2HC1BQ5TFG8 222 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 MED13LQ71F56 2210 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 SRSF7Q16629 238 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS13A-205ENST00000376636 ANKRD29Q8N6D5 301 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 A0A1W2PPI3 338 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 RNF126Q9BV68 326 aa9.63□□□□□ -0.87
VPS13A-205ENST00000376636 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.63□□□□□ -0.87
VPS13A-205ENST00000376636 C9orf118A6NHY6 69 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 FOXG1P55316 489 aaPredicted RBP9.62□□□□□ -0.87
VPS13A-205ENST00000376636 FAM216BQ8N7L0 139 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 LIME1Q9H400 295 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 IL17RELQ6ZVW7 336 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 OR11H6Q8NGC7 330 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 METRNQ9UJH8 293 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 ZNF319Q9P2F9 582 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 C3orf36Q3SXR2 165 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 LINC01551Q86U37 167 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 NBL1P41271 181 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 PDE6HQ13956 83 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 KLRD1Q13241 179 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 SVIPQ8NHG7 77 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 CD55P08174 381 aa9.62□□□□□ -0.87
VPS13A-205ENST00000376636 NBASA2RRP1 2371 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 LINC01560Q8TB33 94 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 USMG5Q96IX5 58 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 LTBRP36941 435 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 EXOC3-AS1Q8N2X6 119 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 FBLN5Q9UBX5 448 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 FAM223BA6NKX1 122 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 C1QL2Q7Z5L3 287 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 FAM223AQ8IWN6 122 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 PLXNA2O75051 1894 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 GREM1O60565 184 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 SRSF3P84103 164 aaKnown RBP9.61□□□□□ -0.87
VPS13A-205ENST00000376636 SLC22A18ASQ8N1D0 253 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 SH2D1AO60880 128 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 CXCL1P09341 107 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 HLA-DMBP28068 263 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 TRBV25-1A0A075B6N4 114 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 CTHRC1Q96CG8 243 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 NRTNQ99748 197 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 SPATA25Q9BR10 227 aa9.61□□□□□ -0.87
VPS13A-205ENST00000376636 TREML4Q6UXN2 200 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 GAGE12HA6NDE8 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 C5orf67F2Z3F1 127 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 FGF16O43320 207 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 ITGBL1O95965 494 aaPredicted RBP9.6□□□□□ -0.87
VPS13A-205ENST00000376636 RPL15P61313 204 aaKnown RBP9.6□□□□□ -0.87
VPS13A-205ENST00000376636 NSUN5P1Q3KNT7 163 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 C14orf178Q8N769 122 aaPredicted RBP9.6□□□□□ -0.87
VPS13A-205ENST00000376636 HCFC1P51610 2035 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 SHISA9B4DS77 424 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 RMI2Q96E14 147 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 ACYP1P07311 99 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 FGF6P10767 208 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 GAGE7O76087 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 C3orf79P0CE67 100 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 GAGE12FP0CL80 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 GAGE12GP0CL81 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 GAGE12IP0CL82 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 SCN10AQ9Y5Y9 1956 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 IGHV1-24A0A0C4DH33 117 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 RHODO00212 210 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 IGHG2P01859 326 aa9.6□□□□□ -0.87
VPS13A-205ENST00000376636 I3L3M4 83 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 LOC101059948A0A1B0GTJ6 334 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 COLCA2A8K830 154 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 CDCP2Q5VXM1 449 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 EML5Q05BV3 1969 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 PATE3B3GLJ2 98 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 DSCR9P59020 149 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 IL9P15248 144 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 FUSP35637 526 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS13A-205ENST00000376636 SUPT4H1P63272 117 aaKnown RBP9.59□□□□□ -0.87
VPS13A-205ENST00000376636 RLFQ13129 1914 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 TRAV12-1A0A0B4J245 112 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 CREBBPQ92793 2442 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 USF3Q68DE3 2245 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 RFNGQ9Y644 331 aa9.59□□□□□ -0.87
VPS13A-205ENST00000376636 H3BQ85 93 aa9.58□□□□□ -0.88
VPS13A-205ENST00000376636 WISP3O95389 354 aaPredicted RBP9.58□□□□□ -0.88
VPS13A-205ENST00000376636 SEC61GP60059 68 aa9.58□□□□□ -0.88
VPS13A-205ENST00000376636 PSG7Q13046 419 aa9.58□□□□□ -0.88
VPS13A-205ENST00000376636 TSSC4Q9Y5U2 329 aaPredicted RBP9.58□□□□□ -0.88
VPS13A-205ENST00000376636 LHBP01229 141 aa9.58□□□□□ -0.88
VPS13A-205ENST00000376636 K7EP13 123 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms