RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TP53TG3Q9ULZ0 132 aa10.42□□□□□ -0.74
SQSTM1-201ENST00000360718 ACANP16112 2415 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 GGTLC3B5MD39 225 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 BPIFB3P59826 476 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 SIGLECL1Q8N7X8 197 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 HSPB9Q9BQS6 159 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 COX7A2P2O60397 106 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 HLA-DQA1P01909 254 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 MGST1P10620 155 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 UBE2L3P68036 154 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 RELQ04864 619 aaPredicted RBP10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 MLANAQ16655 118 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 TOMM20LQ6UXN7 152 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 RNASE7Q9H1E1 156 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 MEGF9Q9H1U4 602 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 CDC42EP3Q9UKI2 254 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 MXRA5Q9NR99 2828 aa10.41□□□□□ -0.74
SQSTM1-201ENST00000360718 SMIM27A0A1W2PRY6 76 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 CGB1A6NKQ9 187 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 EREGO14944 169 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 AMY1AP04745 511 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 Q6ZWC4 215 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 SRSF12Q8WXF0 261 aaKnown RBP10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 CHRDL1Q9BU40 450 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 SERTAD4Q9NUC0 356 aa10.4□□□□□ -0.74
SQSTM1-201ENST00000360718 SSBP2P81877 361 aaPredicted RBP10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 WT1-ASQ06250 92 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 TMEM183BQ1AE95 376 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 C10orf113Q5VZT2 155 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 TEX43Q6ZNM6 134 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 TMEM136Q6ZRR5 245 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 OR2T6Q8NHC8 308 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 IGF2BP2-AS1Q96M15 143 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 C20orf144Q9BQM9 153 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 SRSF8Q9BRL6 282 aaKnown RBP10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 SLC25A2Q9BXI2 301 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 SNHG12Q9BXW3 62 aa10.4□□□□□ -0.75
SQSTM1-201ENST00000360718 IZUMO1RA6ND01 250 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 IGLV2-8P01709 118 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 LINC00310P59036 64 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 FAM167A-AS1Q96KT0 104 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 RASL11BQ9BPW5 248 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF331Q9NQX6 463 aaPredicted RBP10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF586Q9NXT0 402 aa10.39□□□□□ -0.75
SQSTM1-201ENST00000360718 TCRBV4S1A1TA0A5B7 111 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 PSMB11A5LHX3 300 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 GPX1P07203 203 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 FXYD3Q14802 87 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 RASL11AQ6T310 242 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 PAXXQ9BUH6 204 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 GNB4Q9HAV0 340 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 IGLC7A0M8Q6 106 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 SMAD7O15105 426 aaKnown RBP10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 SPINK4O60575 86 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 ETFRF1Q6IPR1 90 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF562Q6V9R5 426 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF705AQ6ZN79 300 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 FAM231DQ6ZW35 169 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 STXBP6Q8NFX7 210 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 MIEN1Q9BRT3 115 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 VAMP8Q9BV40 100 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 OTOGQ6ZRI0 2925 aa10.38□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF253O75346 499 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 THAP8Q8NA92 274 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 NPIPB3Q92617 1050 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF355PQ9NSJ1 428 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 TRAV5A0A0B4J249 113 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 APCSP02743 223 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 REG1AP05451 166 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 FRMD6-AS1P0C7T7 363 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 APELAP0DMC3 54 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 TCL1AP56279 114 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 Q8N9W7 124 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 PIFOQ8TCI5 191 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 VN1R17PQ8TDU5 208 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 ARPC1AQ92747 370 aa10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 SONP18583 2426 aaKnown RBP10.37□□□□□ -0.75
SQSTM1-201ENST00000360718 TEX22C9J3V5 150 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 HLA-DRB1P01911 266 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 BCL6BQ8N143 479 aaPredicted RBP10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 TEX29Q8N6K0 151 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 GRAMD2BQ96HH9 432 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 KCNS1Q96KK3 526 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 CORTO00230 105 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 PEX7O00628 323 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 GAGE1Q13065 139 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 MRPL54Q6P161 138 aaKnown RBP10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 WIPF2Q8TF74 440 aaPredicted RBP10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 C22orf15Q8WYQ4 148 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 MOB4Q9Y3A3 225 aa10.36□□□□□ -0.75
SQSTM1-201ENST00000360718 FLNBO75369 2602 aaKnown RBP10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 H3BUX3 64 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 FSHBP01225 129 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 CD33P20138 364 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 AMTP48728 403 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 SLC35B1P78383 322 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 ZNF329Q86UD4 541 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 OR4B1Q8NGF8 309 aa10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 FAM103A1Q9BTL3 118 aaKnown RBP10.35□□□□□ -0.75
SQSTM1-201ENST00000360718 FNDC4Q9H6D8 234 aaPredicted RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms