RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TIMM8BQ9Y5J9 83 aaPredicted RBP9.62□□□□□ -0.87
VPS29-201ENST00000360579 CRYM-AS1A6NIL9 109 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 BOLA2-SMG1P6H3BVE0 249 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 ADAP1O75689 374 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 AZU1P20160 251 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 CCR6P51684 374 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 OR2F1Q13607 317 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 GGNBP1Q5YKI7 109 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 STEAP1BQ6NZ63 245 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 MZT2AQ6P582 158 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 ZNF493Q6ZR52 646 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 SLC25A32Q9H2D1 315 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 SLC25A22Q9H936 323 aa9.61□□□□□ -0.87
VPS29-201ENST00000360579 ZNF98A6NK75 572 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 M6PRP20645 277 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 OR5I1Q13606 314 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 SMCO1Q147U7 214 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 TMEM144Q7Z5S9 345 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 LYPD1Q8N2G4 141 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 RXFP4Q8TDU9 374 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 RBKSQ9H477 322 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 KCNIP3Q9Y2W7 256 aa9.6□□□□□ -0.87
VPS29-201ENST00000360579 TRAV12-2A0A075B6T6 113 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 TRAV26-1A0A087WT03 109 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 EREGO14944 169 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 RAB11AP62491 216 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 DLK1P80370 383 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 SSBP1Q04837 148 aaKnown RBP9.59□□□□□ -0.87
VPS29-201ENST00000360579 CDPF1Q6NVV7 123 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 AP3S1Q92572 193 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 FRZBQ92765 325 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 PPP1R14DQ9NXH3 145 aa9.59□□□□□ -0.87
VPS29-201ENST00000360579 MRPS16Q9Y3D3 137 aaKnown RBP9.59□□□□□ -0.87
VPS29-201ENST00000360579 A0A0B4J2A0 478 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 DISC1C4P0D8 188 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 H3BNG1 76 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 HTN1P15515 57 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 Q5VSD8 79 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 THAP8Q8NA92 274 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 ZNF738Q8NE65 137 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 TMEM263Q8WUH6 116 aaKnown RBP9.58□□□□□ -0.88
VPS29-201ENST00000360579 C17orf77Q96MU5 243 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 UHRF2Q96PU4 802 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 NOP10Q9NPE3 64 aaKnown RBP9.58□□□□□ -0.88
VPS29-201ENST00000360579 ZNF586Q9NXT0 402 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 EXTL2Q9UBQ6 330 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 SHPKQ9UHJ6 478 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 GPR132Q9UNW8 380 aa9.58□□□□□ -0.88
VPS29-201ENST00000360579 PIGBOS1A0A0B4J2F0 54 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 AKR1C4P17516 323 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 NCS1P62166 190 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 RHOBP62745 196 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 ESRGQ1W209 222 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 RNF182Q8N6D2 247 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 BPIFCQ8NFQ6 507 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 RNASE8Q8TDE3 154 aaKnown RBP9.57□□□□□ -0.88
VPS29-201ENST00000360579 TMEM147Q9BVK8 224 aa9.57□□□□□ -0.88
VPS29-201ENST00000360579 SLC25A39Q9BZJ4 359 aaPredicted RBP9.57□□□□□ -0.88
VPS29-201ENST00000360579 IGKV1OR2-108A0A075B7D4 117 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 TRAV8-2A0A0B4J237 113 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 H7BYZ3 331 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 ZNF701M0R085 212 aaPredicted RBP9.56□□□□□ -0.88
VPS29-201ENST00000360579 ORM2P19652 201 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 LINC00315P59091 139 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 ERVFC1-1P60608 527 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 VBP1P61758 197 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 MRPS10P82664 201 aaKnown RBP9.56□□□□□ -0.88
VPS29-201ENST00000360579 HIST1H1AQ02539 215 aaPredicted RBP9.56□□□□□ -0.88
VPS29-201ENST00000360579 FGL1Q08830 312 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 OR8A1Q8NGG7 326 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 OR1S1Q8NH92 325 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 PRRT1Q99946 306 aa9.56□□□□□ -0.88
VPS29-201ENST00000360579 A0A087WXM4 84 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 A0A0J9YY99 117 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 ATP6V1G2O95670 118 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 RPL7P18124 248 aaKnown RBP9.55□□□□□ -0.88
VPS29-201ENST00000360579 CDKN1BP46527 198 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 XGP55808 180 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 SRPXP78539 464 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 IGFL4Q6B9Z1 124 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 FAAP20Q6NZ36 180 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 LINC00612Q8N6U2 182 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 SCGB3A2Q96PL1 93 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 C20orf144Q9BQM9 153 aa9.55□□□□□ -0.88
VPS29-201ENST00000360579 PAIP2BQ9ULR5 123 aaKnown RBP9.55□□□□□ -0.88
VPS29-201ENST00000360579 IFNA5P01569 189 aa9.54□□□□□ -0.88
VPS29-201ENST00000360579 RLN2P04090 185 aa9.54□□□□□ -0.88
VPS29-201ENST00000360579 ANXA3P12429 323 aa9.54□□□□□ -0.88
VPS29-201ENST00000360579 RPP30P78346 268 aaKnown RBP9.54□□□□□ -0.88
VPS29-201ENST00000360579 Q6ZRN7 208 aaPredicted RBP9.54□□□□□ -0.88
VPS29-201ENST00000360579 LYZL2Q7Z4W2 148 aa9.54□□□□□ -0.88
VPS29-201ENST00000360579 CCDC28AQ8IWP9 274 aa9.54□□□□□ -0.88
VPS29-201ENST00000360579 SRRM2Q9UQ35 2752 aaKnown RBP9.53□□□□□ -0.88
VPS29-201ENST00000360579 AKAIN1P0CW23 69 aa9.53□□□□□ -0.88
VPS29-201ENST00000360579 HOXA5P20719 270 aa9.53□□□□□ -0.88
VPS29-201ENST00000360579 S100A7AQ86SG5 101 aa9.53□□□□□ -0.88
VPS29-201ENST00000360579 LRRC20Q8TCA0 184 aa9.53□□□□□ -0.88
VPS29-201ENST00000360579 CIB3Q96Q77 187 aaPredicted RBP9.53□□□□□ -0.88
VPS29-201ENST00000360579 FUNDC2Q9BWH2 189 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms