RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 KNCNA6PVL3 124 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 PSPNO60542 156 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 HAPLN4Q86UW8 402 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 MSRB2Q9Y3D2 182 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 RBBP6Q7Z6E9 1792 aaKnown RBP13.09□□□□□ -0.31
COL18A1-203ENST00000359759 DKK1O94907 266 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 GAGE1Q13065 139 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 CSRP2Q16527 193 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 LILRA1O75019 489 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 LINC01559Q495D7 138 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 MRPL14Q6P1L8 145 aaKnown RBP13.09□□□□□ -0.31
COL18A1-203ENST00000359759 UBR3Q6ZT12 1888 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 RNF144BQ7Z419 303 aa13.09□□□□□ -0.31
COL18A1-203ENST00000359759 TRAV12-1A0A0B4J245 112 aa13.08□□□□□ -0.31
COL18A1-203ENST00000359759 PFN2P35080 140 aa13.08□□□□□ -0.31
COL18A1-203ENST00000359759 MORN5Q5VZ52 161 aa13.08□□□□□ -0.31
COL18A1-203ENST00000359759 TRAV25A0A0B4J276 109 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 LINC01549A6NIU2 74 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 H0YJW9 148 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 PMVKQ15126 192 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 POLR3KQ9Y2Y1 108 aaPredicted RBP13.08□□□□□ -0.32
COL18A1-203ENST00000359759 TRBV7-1A0A0A6YYK4 115 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 A0A1B0GW64 132 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 TMEM213A2RRL7 107 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 C5orf63A6NC05 138 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 LINC00473A8K010 186 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 H3BUX3 64 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 KLHL30-AS1Q8NEE0 82 aa13.08□□□□□ -0.32
COL18A1-203ENST00000359759 PIP4P2Q8N4L2 257 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 CD5LO43866 347 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 HOXD3P31249 432 aaPredicted RBP13.07□□□□□ -0.32
COL18A1-203ENST00000359759 CFHR2P36980 270 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 MRPL52Q86TS9 123 aaKnown RBP13.07□□□□□ -0.32
COL18A1-203ENST00000359759 FBLN5Q9UBX5 448 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 TSSC4Q9Y5U2 329 aaPredicted RBP13.07□□□□□ -0.32
COL18A1-203ENST00000359759 SOCS3O14543 225 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 CRYGSP22914 178 aa13.07□□□□□ -0.32
COL18A1-203ENST00000359759 TP53BP1Q12888 1972 aaPredicted RBP13.07□□□□□ -0.32
COL18A1-203ENST00000359759 DTX1Q86Y01 620 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 TP53TG1Q9Y2A0 90 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 ARMS2P0C7Q2 107 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 COL4A1P02462 1669 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 LY6G5BQ8NDX9 201 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 LIME1Q9H400 295 aa13.06□□□□□ -0.32
COL18A1-203ENST00000359759 SPSB3Q6PJ21 355 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 MRPL27Q9P0M9 148 aaKnown RBP13.05□□□□□ -0.32
COL18A1-203ENST00000359759 TMEM126AQ9H061 195 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 TRAV1-1A0A0B4J248 108 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 TRAV26-2A0A0B4J265 109 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 TMEM178BH3BS89 294 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 NMSQ5H8A3 153 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 HAMPP81172 84 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 C9orf139Q6ZV77 190 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 IL17RELQ6ZVW7 336 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 LHFPL1Q86WI0 220 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 KLK9Q9UKQ9 250 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 DOCK4Q8N1I0 1966 aa13.05□□□□□ -0.32
COL18A1-203ENST00000359759 Q86TA4 180 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 GAGE12JA6NER3 117 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 BUB1B-PAK6H3BSN5 160 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 GAGE4Q13068 117 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 GAGE5Q13069 117 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 SLC25A16P16260 332 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 RS1O15537 224 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 ZNRD1Q9P1U0 126 aa13.04□□□□□ -0.32
COL18A1-203ENST00000359759 PSME4Q14997 1843 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 ADCYAP1P18509 176 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 ASPHD1Q5U4P2 390 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 TMEM14EPQ6UXP3 125 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 RHPN1-AS1Q9BWJ2 59 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 MPDZO75970 2070 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 IGHV3-38A0A0C4DH36 116 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 A0A0G2JRQ6 117 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 GAFA1Q96PS6 74 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 EFNA2O43921 213 aa13.03□□□□□ -0.32
COL18A1-203ENST00000359759 C15orf62A8K5M9 175 aa13.02□□□□□ -0.32
COL18A1-203ENST00000359759 NXPH4O95158 308 aa13.02□□□□□ -0.32
COL18A1-203ENST00000359759 LYPD2Q6UXB3 125 aa13.02□□□□□ -0.32
COL18A1-203ENST00000359759 GGNQ86UU5 652 aa13.02□□□□□ -0.32
COL18A1-203ENST00000359759 LY6HO94772 140 aa13.02□□□□□ -0.32
COL18A1-203ENST00000359759 C5orf64Q2M2E5 130 aa13.02□□□□□ -0.33
COL18A1-203ENST00000359759 FAM166AQ6J272 317 aa13.02□□□□□ -0.33
COL18A1-203ENST00000359759 SVILO95425 2214 aa13.02□□□□□ -0.33
COL18A1-203ENST00000359759 NYNRINQ9P2P1 1898 aaKnown RBP13.02□□□□□ -0.33
COL18A1-203ENST00000359759 SRRM5B3KS81 715 aa13.02□□□□□ -0.33
COL18A1-203ENST00000359759 SYNJ2BPP57105 145 aa13.02□□□□□ -0.33
COL18A1-203ENST00000359759 TPRP12270 2363 aaKnown RBP13.01□□□□□ -0.33
COL18A1-203ENST00000359759 TRPT1Q86TN4 253 aaKnown RBP13.01□□□□□ -0.33
COL18A1-203ENST00000359759 SIGLEC9Q9Y336 463 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 ZNF561-AS1K7EIQ3 104 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 TRACP01848 142 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 CMC4P56277 68 aaPredicted RBP13.01□□□□□ -0.33
COL18A1-203ENST00000359759 NEGR1Q7Z3B1 354 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 GAS1P54826 345 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 DEFB131AP59861 70 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 FLVCR1-AS1Q8TAF5 88 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 PARP14Q460N5 1801 aa13.01□□□□□ -0.33
COL18A1-203ENST00000359759 ICE1Q9Y2F5 2266 aa13□□□□□ -0.33
COL18A1-203ENST00000359759 IFITM1P13164 125 aa13□□□□□ -0.33
COL18A1-203ENST00000359759 XCL2Q9UBD3 114 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms