RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CADP27708 2225 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 IGHV3OR15-7A0A075B7D8 119 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 SPRY3O43610 288 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 TCRAP04437 139 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 TNFAIP6P98066 277 aaPredicted RBP12.7□□□□□ -0.38
HMGA1-202ENST00000347617 ITLN1Q8WWA0 313 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 NEU4Q8WWR8 484 aaPredicted RBP12.7□□□□□ -0.38
HMGA1-202ENST00000347617 NPIPB3Q92617 1050 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 HARBI1Q96MB7 349 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 OTORQ9NRC9 128 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 RNF7Q9UBF6 113 aa12.7□□□□□ -0.38
HMGA1-202ENST00000347617 APOHP02749 345 aaPredicted RBP12.69□□□□□ -0.38
HMGA1-202ENST00000347617 TNFRSF1AP19438 455 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 APOBEC3AP31941 199 aaPredicted RBP12.69□□□□□ -0.38
HMGA1-202ENST00000347617 PLP1P60201 277 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 LGALS9BQ3B8N2 356 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 LGALS9CQ6DKI2 356 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 FA2HQ7L5A8 372 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 MOGAT3Q86VF5 341 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 OR10W1Q8NGF6 305 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 TMUB1Q9BVT8 246 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 CACNA1AO00555 2505 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 A0A1B0GUT8 65 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 hADV38S2A0JD32 116 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 IGKV1-16P04430 117 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 ERASQ7Z444 233 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 TEX45Q8NA69 505 aa12.69□□□□□ -0.38
HMGA1-202ENST00000347617 DSPP15924 2871 aaKnown RBP12.68□□□□□ -0.38
HMGA1-202ENST00000347617 C17orf100A8MU93 164 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 CRYGCP07315 174 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 COL8A1P27658 744 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 ADORA2A-AS1P86434 159 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 PVRIGQ6DKI7 326 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 Q86TA4 180 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 OR1B1Q8NGR6 318 aa12.68□□□□□ -0.38
HMGA1-202ENST00000347617 SHISA9B4DS77 424 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 NEGR1Q7Z3B1 354 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 BOD1L2Q8IYS8 172 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 OR4C13Q8NGP0 309 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 FLYWCH2Q96CP2 140 aaKnown RBP12.67□□□□□ -0.38
HMGA1-202ENST00000347617 FNDC4Q9H6D8 234 aaPredicted RBP12.67□□□□□ -0.38
HMGA1-202ENST00000347617 TMEM14CQ9P0S9 112 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 LINC00312Q9Y6C7 94 aa12.67□□□□□ -0.38
HMGA1-202ENST00000347617 CD3EP07766 207 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 FGF6P10767 208 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 SCGB1A1P11684 91 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 GP9P14770 177 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 MEF2CQ06413 473 aaPredicted RBP12.66□□□□□ -0.38
HMGA1-202ENST00000347617 LINC00322Q6ZN03 302 aaPredicted RBP12.66□□□□□ -0.38
HMGA1-202ENST00000347617 Q9H3A6 140 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 SPTA1P02549 2419 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 HOXB4P17483 251 aaPredicted RBP12.66□□□□□ -0.38
HMGA1-202ENST00000347617 ZNF137PP52743 207 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 SSBP2P81877 361 aaPredicted RBP12.66□□□□□ -0.38
HMGA1-202ENST00000347617 LY6DQ14210 128 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 TEX36Q5VZQ5 186 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 C8orf31Q8N9H6 132 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 OR2K2Q8NGT1 345 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 BLNKQ8WV28 456 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 GAFA1Q96PS6 74 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 NPFFR1Q9GZQ6 430 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 TP73-AS1Q9UF72 201 aa12.66□□□□□ -0.38
HMGA1-202ENST00000347617 A1L4Q6 167 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 B9A039 149 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 SMAD7O15105 426 aaKnown RBP12.65□□□□□ -0.38
HMGA1-202ENST00000347617 CT45A10P0DMU9 189 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 SPRNQ5BIV9 151 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 UTF1Q5T230 341 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 ZNF788Q6ZQV5 615 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 PRSS3P2Q8NHM4 247 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 PCNX1Q96RV3 2341 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 NCOR2Q9Y618 2525 aa12.65□□□□□ -0.38
HMGA1-202ENST00000347617 E7EQL1 145 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 PPIAL4DF5H284 164 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 WT1-ASQ06250 92 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 VMA21Q3ZAQ7 101 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 ASPHD1Q5U4P2 390 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 ZNF493Q6ZR52 646 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 C8orf46Q8TAG6 207 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 MRPL20Q9BYC9 149 aaKnown RBP12.64□□□□□ -0.39
HMGA1-202ENST00000347617 DSCAMO60469 2012 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 TNCP24821 2201 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 PLCE1Q9P212 2302 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 A0A0G2JLM5 398 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.64□□□□□ -0.39
HMGA1-202ENST00000347617 NDUFS8O00217 210 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 PIFOQ8TCI5 191 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 RPH3ALQ9UNE2 315 aa12.64□□□□□ -0.39
HMGA1-202ENST00000347617 RAI1Q7Z5J4 1906 aaPredicted RBP12.63□□□□□ -0.39
HMGA1-202ENST00000347617 FAM90A27PA6NNH2 459 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 K7EQM0 130 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 ORM2P19652 201 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 LINC00311Q8N616 119 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 TMEM75Q8N9X5 138 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 TMEM116Q8NCL8 245 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 TMEM186Q96B77 213 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 RABAC1Q9UI14 185 aa12.63□□□□□ -0.39
HMGA1-202ENST00000347617 KIR3DS1Q14943 382 aa12.62□□□□□ -0.39
HMGA1-202ENST00000347617 HIGD1AQ9Y241 93 aa12.62□□□□□ -0.39
HMGA1-202ENST00000347617 U3KQK5 164 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms