RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MBD3L3A6NE82 208 aaPredicted RBP9.63□□□□□ -0.87
USP1-201ENST00000339950 MBD3L5A6NJ08 208 aaPredicted RBP9.63□□□□□ -0.87
USP1-201ENST00000339950 MBD3L2Q8NHZ7 208 aaPredicted RBP9.63□□□□□ -0.87
USP1-201ENST00000339950 CLEC7AQ9BXN2 247 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 KLK15Q9H2R5 256 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 PRO3102Q9H379 93 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 E7EQL1 145 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 TMEM178BH3BS89 294 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 SPRY2O43597 315 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 FAM162BQ5T6X4 162 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 COL5A1P20908 1838 aaPredicted RBP9.62□□□□□ -0.87
USP1-201ENST00000339950 HIVEP2P31629 2446 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 A0A1W2PS18 150 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 A8MWL6 223 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 RELQ04864 619 aaPredicted RBP9.62□□□□□ -0.87
USP1-201ENST00000339950 THYN1Q9P016 225 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 HSPB8Q9UJY1 196 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 EPDR1Q9UM22 224 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.62□□□□□ -0.87
USP1-201ENST00000339950 SMKR1H3BMG3 65 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 RUSC1-AS1Q66K80 236 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 LINC00173Q6ZV60 143 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 PPP1R27Q86WC6 154 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 AAMDCQ9H7C9 122 aa9.62□□□□□ -0.87
USP1-201ENST00000339950 NCR2O95944 276 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 TYMSP04818 313 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 RAB1CQ92928 201 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 PCSK5Q92824 1860 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 TCRBV4S1A1TA0A5B7 111 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 HLA-DRB1P01911 266 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 TMEM186Q96B77 213 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 TRAV9-2A0A087WT02 112 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 CCL25O15444 150 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 IGHV1-8P0DP01 117 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 Q71RC1 249 aaPredicted RBP9.61□□□□□ -0.87
USP1-201ENST00000339950 TMEM133Q9H2Q1 129 aa9.61□□□□□ -0.87
USP1-201ENST00000339950 C7orf71A4D174 169 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 P0C879 139 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 LY6DQ14210 128 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 COX19Q49B96 90 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 ZNF257Q9Y2Q1 563 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 IGLV3-9A0A075B6K5 115 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 IGKV2-40A0A087WW87 121 aaPredicted RBP9.6□□□□□ -0.87
USP1-201ENST00000339950 H3BVH4 76 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 IGKV2D-40P01614 121 aaPredicted RBP9.6□□□□□ -0.87
USP1-201ENST00000339950 SCGB1C2P0DMR2 95 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 LY6EQ16553 131 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 PRSS33Q8NF86 280 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 TSKUQ8WUA8 353 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 GAGE12BA1L429 117 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 NPIPB5A8MRT5 1133 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 GOSR1O95249 250 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 HTN1P15515 57 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 CX3CL1P78423 397 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 TWIST1Q15672 202 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 COA6Q5JTJ3 125 aaKnown RBP9.6□□□□□ -0.87
USP1-201ENST00000339950 Q6ZS92 163 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 ZNF503Q96F45 646 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 SLC25A2Q9BXI2 301 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 EPG5Q9HCE0 2579 aa9.6□□□□□ -0.87
USP1-201ENST00000339950 CIDEAO60543 219 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PRR20EP86478 221 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PRR20CP86479 221 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PRR20DP86480 221 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PRR20BP86481 221 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PRR20AP86496 221 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 AP5S1Q9NUS5 200 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PEF1Q9UBV8 284 aaKnown RBP9.59□□□□□ -0.87
USP1-201ENST00000339950 IGHV2-26A0A0B4J1V2 119 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 IZUMO1RA6ND01 250 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 FABP2P12104 132 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 GPR183P32249 361 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 SELENOTP62341 195 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 SP5Q6BEB4 398 aaPredicted RBP9.59□□□□□ -0.87
USP1-201ENST00000339950 PATE2Q6UY27 113 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 TMEM136Q6ZRR5 245 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 TMEM75Q8N9X5 138 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 GPR82Q96P67 336 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 GTSF1LQ9H1H1 148 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 PPP1R14DQ9NXH3 145 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 IGLC2P0DOY2 106 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 IGLC3P0DOY3 106 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 MC5RP33032 325 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 C2orf83Q53S99 150 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 COX11Q9Y6N1 276 aa9.59□□□□□ -0.87
USP1-201ENST00000339950 LOC107984156A0A0G2JMH3 177 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 A0A1W2PRE2 83 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 APOHP02749 345 aaPredicted RBP9.58□□□□□ -0.88
USP1-201ENST00000339950 LOXP28300 417 aaPredicted RBP9.58□□□□□ -0.88
USP1-201ENST00000339950 HBBP68871 147 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 VWC2Q2TAL6 325 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 ARL17AQ8IVW1 177 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 MTURNQ8N3F0 131 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 OSTCQ9NRP0 149 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 RAXQ9Y2V3 346 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 COL4A2P08572 1712 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 ADAMTS20P59510 1910 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 TGFAP01135 160 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 TMEM219Q86XT9 240 aa9.58□□□□□ -0.88
USP1-201ENST00000339950 SPACA3Q8IXA5 215 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms