RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PYYP10082 97 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 HIST1H1EP10412 219 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 RPL7P18124 248 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 REC114Q7Z4M0 266 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 CCDC28AQ8IWP9 274 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 IQCF2Q8IXL9 164 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 LINC00052Q96N35 136 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 YTHDF2Q9Y5A9 579 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 IGHV3-35A0A0C4DH35 117 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 A0A1B0GUS0 222 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 A8MWP6 167 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 C11orf94C9JXX5 98 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 PDE6DO43924 150 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 ADCYAP1P18509 176 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 MYCNOSP40205 109 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 PDE6HQ13956 83 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 UNQ9165/PRO28630Q6UXU0 137 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 C11orf52Q96A22 123 aa11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 NARS2Q96I59 477 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-202ENST00000334448 F6UZH7 168 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 LGALS9O00182 355 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 ZNF253O75346 499 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 OR10J4P0C629 311 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 NBEAP1P0C6P0 100 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 NPPCP23582 126 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 FAM106AQ4KMX7 169 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 LEMD1Q68G75 181 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 OR4F17Q8NGA8 305 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 OR4F4Q96R69 305 aa11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 DAZ1Q9NQZ3 744 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-202ENST00000334448 CUBNO60494 3623 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 A0A087X0K7 114 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 GGTLC3B5MD39 225 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 MEOX2P50222 304 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 FAM90A2PQ658T7 463 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 LYPD1Q8N2G4 141 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 CYB561D1Q8N8Q1 229 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 UFC1Q9Y3C8 167 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 RNF114Q9Y508 228 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 MAST4O15021 2626 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 C2CD3Q4AC94 2353 aa11.41□□□□□ -0.58
CCDC88C-202ENST00000334448 TRBV19A0A075B6N1 114 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 IGHV4OR15-8A0A075B7B6 117 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 A0A087WW49 117 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 H3BQ15 152 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 ATP5G3P48201 142 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 UBE2G2P60604 165 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 FHL3Q13643 280 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 RPEL1Q2QD12 228 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 SOHLH1Q5JUK2 328 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 CST9LP1Q5W188 147 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 C16orf54Q6UWD8 224 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 OR5B12Q96R08 314 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 ZNF586Q9NXT0 402 aa11.4□□□□□ -0.58
CCDC88C-202ENST00000334448 A0A1W2PS18 150 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 F8W036 122 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 NDUFB4O95168 129 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 KLF5Q13887 457 aaPredicted RBP11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 FAM74A3Q4VXF1 159 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 C1QL4Q86Z23 238 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 OR8I2Q8N0Y5 310 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 ARL6IP6Q8N6S5 226 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 GLMPQ8WWB7 406 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 C20orf24Q9BUV8 137 aa11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 TSSC4Q9Y5U2 329 aaPredicted RBP11.39□□□□□ -0.59
CCDC88C-202ENST00000334448 IGHV3OR16-8A0A075B7F1 116 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 IGHV7-4-1A0A0J9YVY3 117 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 LINC01619G3V211 115 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 CD28P10747 220 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 HOXD3P31249 432 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 GALR1P47211 349 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 SIGLEC15Q6ZMC9 328 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 RPUSD4Q96CM3 377 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 C17orf77Q96MU5 243 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 ELOVL1Q9BW60 279 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 OTORQ9NRC9 128 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 SMAD5-AS1Q9Y6J3 95 aa11.38□□□□□ -0.59
CCDC88C-202ENST00000334448 TMEM213A2RRL7 107 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 APOHP02749 345 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 BMI1P35226 326 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 C5orf17Q8NAS9 161 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 KLHL30-AS1Q8NEE0 82 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 GRAMD2BQ96HH9 432 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 SMPXQ9UHP9 88 aa11.37□□□□□ -0.59
CCDC88C-202ENST00000334448 C18orf65Q6ZTR6 163 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 SVBPQ8N300 66 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 OR1N2Q8NGR9 330 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 C2CD4CQ8TF44 421 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 HIST1H2BAQ96A08 127 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 Q9H3A6 140 aa11.36□□□□□ -0.59
CCDC88C-202ENST00000334448 SCO2A0A1W2PP80 73 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 ZNF320A2RRD8 509 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 CHEK1O14757 476 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 ZNF207O43670 478 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 ATF4P18848 351 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 SUMO1P63165 101 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 PSG9Q00887 426 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 BLNKQ8WV28 456 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 CITED2Q99967 270 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 RHPN1-AS1Q9BWJ2 59 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms