RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ELOA3CA0A087WX78 387 aaPredicted RBP11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 IFNA5P01569 189 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 HAGHQ16775 308 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 ZNF709Q8N972 641 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 OR1L4Q8NGR5 311 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 TMEM37Q8WXS4 190 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 GPR82Q96P67 336 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 AQP10Q96PS8 301 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 WFDC1Q9HC57 220 aa11.79□□□□□ -0.52
CCDC28A-201ENST00000332797 LOC102724200A0A096LPH7 203 aaPredicted RBP11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 NHLRC4P0CG21 123 aaPredicted RBP11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 PSMG4Q5JS54 123 aa11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 LINC00322Q6ZN03 302 aaPredicted RBP11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 INO80EQ8NBZ0 244 aaPredicted RBP11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 PFDN5Q99471 154 aa11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 RSG1Q9BU20 258 aa11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 DNAJC4Q9NNZ3 241 aa11.78□□□□□ -0.52
CCDC28A-201ENST00000332797 C17orf112F2Z3M2 114 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 G3V3Q6 166 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 SMLR1H3BR10 107 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 RPL7P18124 248 aaKnown RBP11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 ATF4P18848 351 aaPredicted RBP11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 SNRPD3P62318 126 aaKnown RBP11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 SCGB1C1Q8TD33 95 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 KCNIP2Q9NS61 270 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 RNF24Q9Y225 148 aa11.77□□□□□ -0.52
CCDC28A-201ENST00000332797 PFDN1O60925 122 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 RPL35AP18077 110 aaKnown RBP11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 MORN5Q5VZ52 161 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 AKAP14Q86UN6 197 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 TNFSF18Q9UNG2 199 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 SOCS3O14543 225 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 ID1P41134 155 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 MEOX2P50222 304 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 GCSAMLQ5JQS6 135 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.76□□□□□ -0.53
CCDC28A-201ENST00000332797 RNF222A6NCQ9 220 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 KNCNA6PVL3 124 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 PSMB3P49720 205 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 GATAD1Q8WUU5 269 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 C16orf92Q96LL3 132 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 C17orf77Q96MU5 243 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 LINC00052Q96N35 136 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 TM2D3Q9BRN9 247 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 PARD6GQ9BYG4 376 aaPredicted RBP11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 ZMAT4Q9H898 229 aa11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 SEPSECSQ9HD40 501 aaKnown RBP11.75□□□□□ -0.53
CCDC28A-201ENST00000332797 TRAV5A0A0B4J249 113 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 ZNF266Q14584 549 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 SAMD13Q5VXD3 122 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 BPIFA4PQ86YQ2 179 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 STHQ8IWL8 128 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 SPATA25Q9BR10 227 aa11.74□□□□□ -0.53
CCDC28A-201ENST00000332797 ISLRO14498 428 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 MRPS12O15235 138 aaKnown RBP11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 ARPC5O15511 151 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 APOC4P55056 127 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 ACTL10Q5JWF8 245 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 FFAR4Q5NUL3 377 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 RETNQ9HD89 108 aa11.73□□□□□ -0.53
CCDC28A-201ENST00000332797 A0A087X0K7 114 aa11.72□□□□□ -0.53
CCDC28A-201ENST00000332797 SNRPCP09234 159 aaKnown RBP11.72□□□□□ -0.53
CCDC28A-201ENST00000332797 FAM78BQ5VT40 261 aa11.72□□□□□ -0.53
CCDC28A-201ENST00000332797 RFNGQ9Y644 331 aa11.72□□□□□ -0.53
CCDC28A-201ENST00000332797 U3KQK5 164 aa11.72□□□□□ -0.53
CCDC28A-201ENST00000332797 SPATA31B1PQ5VZV4 182 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 IGFL4Q6B9Z1 124 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 TCTE3Q8IZS6 198 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 HSD17B11Q8NBQ5 300 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 LRRC20Q8TCA0 184 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 ST6GAL2Q96JF0 529 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 C20orf173Q96LM9 149 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 RCHY1Q96PM5 261 aa11.71□□□□□ -0.53
CCDC28A-201ENST00000332797 NBEAL2Q6ZNJ1 2754 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 KIR2DL5BA0A0G2JN68 375 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 KIR2DL5BA0A0G2JPC4 375 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 H3BTX0 84 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 DEFB1P60022 68 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 MIR17HGQ75NE6 70 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 KIR2DL5AQ8N109 375 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 KIR2DL5BQ8NHK3 375 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 MFFQ9GZY8 342 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 TIMM9Q9Y5J7 89 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 HUWE1Q7Z6Z7 4374 aaKnown RBP11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 TRAV8-2A0A0B4J237 113 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 RPL7L1Q6DKI1 246 aaKnown RBP11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 LCN15Q6UWW0 184 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 TRPT1Q86TN4 253 aaKnown RBP11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 RNF182Q8N6D2 247 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 MRPL32Q9BYC8 188 aaKnown RBP11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 CSTL1Q9H114 145 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 RPRMQ9NS64 109 aa11.7□□□□□ -0.54
CCDC28A-201ENST00000332797 BORCS7-ASMTA0A0B4J1R7 106 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 H3BQ15 152 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 UBE2CO00762 179 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 IGLC2P0DOY2 106 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 CXCL2P19875 107 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 DEFB135Q30KP9 77 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 GDF5OSQ5U4N7 250 aa11.69□□□□□ -0.54
CCDC28A-201ENST00000332797 OR11H4Q8NGC9 324 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms