RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 RETNQ9HD89 108 aa10.33□□□□□ -0.76
LIMS1-201ENST00000332345 DNAJC4Q9NNZ3 241 aa10.33□□□□□ -0.76
LIMS1-201ENST00000332345 UBE2L5PA0A1B0GUS4 154 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 ISLRO14498 428 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 SPRY2O43597 315 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 COX7A2P2O60397 106 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 CXCL3P19876 107 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 RPL29P47914 159 aaKnown RBP10.32□□□□□ -0.76
LIMS1-201ENST00000332345 PSMB3P49720 205 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 LINC01559Q495D7 138 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 ACTL10Q5JWF8 245 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 PATE2Q6UY27 113 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 LINC00305Q7Z4B0 112 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 OR1L4Q8NGR5 311 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 THAP6Q8TBB0 222 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 C16orf92Q96LL3 132 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 LINC00052Q96N35 136 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 SCRT1Q9BWW7 348 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 STAB2Q8WWQ8 2551 aa10.32□□□□□ -0.76
LIMS1-201ENST00000332345 TENM3Q9P273 2699 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 KNCNA6PVL3 124 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 ATF4P18848 351 aaPredicted RBP10.31□□□□□ -0.76
LIMS1-201ENST00000332345 FGF7P21781 194 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 C10orf113Q5VZT2 155 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 RNF183Q96D59 192 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 UHRF2Q96PU4 802 aa10.31□□□□□ -0.76
LIMS1-201ENST00000332345 CA1P00915 261 aaPredicted RBP10.3□□□□□ -0.76
LIMS1-201ENST00000332345 SPP1P10451 314 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 RPL12P30050 165 aaKnown RBP10.3□□□□□ -0.76
LIMS1-201ENST00000332345 B2MP61769 119 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 NUTF2P61970 127 aaKnown RBP10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PRR20EP86478 221 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PRR20CP86479 221 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PRR20DP86480 221 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PRR20BP86481 221 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PRR20AP86496 221 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 FGL1Q08830 312 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 CLINT1Q14677 625 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 OXA1LQ15070 435 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 FCN2Q15485 313 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 DEFB135Q30KP9 77 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 TMEM41BQ5BJD5 291 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 MIC13Q5XKP0 118 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 MORN3Q6PF18 240 aaPredicted RBP10.3□□□□□ -0.76
LIMS1-201ENST00000332345 TRPT1Q86TN4 253 aaKnown RBP10.3□□□□□ -0.76
LIMS1-201ENST00000332345 ZNF709Q8N972 641 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 ASB13Q8WXK3 278 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 TMEM37Q8WXS4 190 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 PFDN5Q99471 154 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 SLC39A9Q9NUM3 307 aa10.3□□□□□ -0.76
LIMS1-201ENST00000332345 C3orf84H3BNL1 204 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 SOCS3O14543 225 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 LYL1P12980 280 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 OPCMLQ14982 345 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 SPATA31B1PQ5VZV4 182 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 BPIFA4PQ86YQ2 179 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 OR11H7Q8NGC8 314 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 MUC7Q8TAX7 377 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 LRRC20Q8TCA0 184 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 GATAD1Q8WUU5 269 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 EDA2RQ9HAV5 297 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 RPRMQ9NS64 109 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 MBD2Q9UBB5 411 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 HSPB11Q9Y547 144 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 PXMP4Q9Y6I8 212 aa10.29□□□□□ -0.76
LIMS1-201ENST00000332345 H3BMM0 161 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 EBLN2Q6P2I7 272 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 FOXI2Q6ZQN5 318 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 ATP5SQ99766 215 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 NPCDR1Q9BY65 106 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 KCNIP2Q9NS61 270 aa10.28□□□□□ -0.76
LIMS1-201ENST00000332345 A0A087X0K7 114 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 C17orf112F2Z3M2 114 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 IFNA5P01569 189 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 GIPP09681 153 aaPredicted RBP10.27□□□□□ -0.77
LIMS1-201ENST00000332345 HLA-DRB4P13762 266 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 IL17DQ8TAD2 202 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 SCGB1C1Q8TD33 95 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 C17orf77Q96MU5 243 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 WDR61Q9GZS3 305 aaKnown RBP10.27□□□□□ -0.77
LIMS1-201ENST00000332345 SAV1Q9H4B6 383 aaPredicted RBP10.27□□□□□ -0.77
LIMS1-201ENST00000332345 HLA-DRB4X5D2U9 266 aa10.27□□□□□ -0.77
LIMS1-201ENST00000332345 RARRES2Q99969 163 aa10.26□□□□□ -0.77
LIMS1-201ENST00000332345 C1QTNF4Q9BXJ3 329 aa10.26□□□□□ -0.77
LIMS1-201ENST00000332345 MRPS12O15235 138 aaKnown RBP10.25□□□□□ -0.77
LIMS1-201ENST00000332345 CXCL2P19875 107 aa10.25□□□□□ -0.77
LIMS1-201ENST00000332345 OR11H2Q8NH07 326 aa10.25□□□□□ -0.77
LIMS1-201ENST00000332345 CLUHP3Q96NS8 147 aa10.25□□□□□ -0.77
LIMS1-201ENST00000332345 DNAH7Q8WXX0 4024 aa10.25□□□□□ -0.77
LIMS1-201ENST00000332345 A0A0J9YX75 114 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 GIG44P09565 113 aaPredicted RBP10.24□□□□□ -0.77
LIMS1-201ENST00000332345 GUK1Q16774 197 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 GDF5OSQ5U4N7 250 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 MORN5Q5VZ52 161 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 LCN15Q6UWW0 184 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 OR4B1Q8NGF8 309 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 C20orf173Q96LM9 149 aa10.24□□□□□ -0.77
LIMS1-201ENST00000332345 PARD6GQ9BYG4 376 aaPredicted RBP10.24□□□□□ -0.77
LIMS1-201ENST00000332345 SMIM3Q9BZL3 60 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms