RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 SLC45A2Q9UMX9 530 aa11.71□□□□□ -0.53
HDDC2-201ENST00000318787 F6UB75 175 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 H3BRN7 92 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 HLA-DRB4P13762 266 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 MEOX2P50222 304 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 SELENOTP62341 195 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 IFITM3Q01628 133 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 EBLN2Q6P2I7 272 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 NRARPQ7Z6K4 114 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 C11orf45Q8TAV5 145 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 HLA-DRB4X5D2U9 266 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 DNAH1Q9P2D7 4330 aa11.7□□□□□ -0.54
HDDC2-201ENST00000318787 IGHV3OR16-12A0A075B7B8 117 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 IGHV4-28A0A0C4DH34 117 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 ISLRO14498 428 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 SOCS3O14543 225 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 AGPAT2O15120 278 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 SIX6O95475 246 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 IGFL4Q6B9Z1 124 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 ZNF546Q86UE3 836 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 GPR82Q96P67 336 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 C1QTNF4Q9BXJ3 329 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 C11orf68Q9H3H3 251 aaKnown RBP11.69□□□□□ -0.54
HDDC2-201ENST00000318787 SAV1Q9H4B6 383 aaPredicted RBP11.69□□□□□ -0.54
HDDC2-201ENST00000318787 RPRMQ9NS64 109 aa11.69□□□□□ -0.54
HDDC2-201ENST00000318787 FNDC10F2Z333 226 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 DEFA1P59665 94 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 DEFA3P59666 94 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 LRRC37A5PQ49AS3 106 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 CEMP1Q6PRD7 247 aaPredicted RBP11.68□□□□□ -0.54
HDDC2-201ENST00000318787 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 FOXI2Q6ZQN5 318 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 LRRC20Q8TCA0 184 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 PHLDA1Q8WV24 401 aaPredicted RBP11.68□□□□□ -0.54
HDDC2-201ENST00000318787 C20orf173Q96LM9 149 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 SHANK2-AS3Q9BTD1 123 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 ARV1Q9H2C2 271 aa11.68□□□□□ -0.54
HDDC2-201ENST00000318787 KLK5Q9Y337 293 aaPredicted RBP11.68□□□□□ -0.54
HDDC2-201ENST00000318787 UBE2L5PA0A1B0GUS4 154 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 INMT-MINDY4F8WBC2 141 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 COX7A2P2O60397 106 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 DEDDO75618 318 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 RPL7P18124 248 aaKnown RBP11.67□□□□□ -0.54
HDDC2-201ENST00000318787 BAXQ07812 192 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 FAM78BQ5VT40 261 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 SAMD13Q5VXD3 122 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 S100A7AQ86SG5 101 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 STX12Q86Y82 276 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 RNF182Q8N6D2 247 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 MGST2Q99735 147 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 GGACTQ9BVM4 153 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 MFFQ9GZY8 342 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 BATF3Q9NR55 127 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 IGSF23A1L1A6 192 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 SNRPCP09234 159 aaKnown RBP11.67□□□□□ -0.54
HDDC2-201ENST00000318787 PRB4P10163 310 aaPredicted RBP11.67□□□□□ -0.54
HDDC2-201ENST00000318787 MIFP14174 115 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 CAMLGP49069 296 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 RAB31Q13636 194 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 Q8NAQ8 132 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 ZNF738Q8NE65 137 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 SLC35B3Q9H1N7 401 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 LYRM2Q9NU23 88 aaPredicted RBP11.67□□□□□ -0.54
HDDC2-201ENST00000318787 UQCC1Q9NVA1 299 aa11.67□□□□□ -0.54
HDDC2-201ENST00000318787 LY6G6CO95867 125 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 RBMY1A1P0DJD3 496 aaKnown RBP11.66□□□□□ -0.54
HDDC2-201ENST00000318787 RBMY1CP0DJD4 496 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 PLP1P60201 277 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 RBMY1FQ15415 496 aaKnown RBP11.66□□□□□ -0.54
HDDC2-201ENST00000318787 PATE2Q6UY27 113 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 LINC00305Q7Z4B0 112 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 CSNK1G2-AS1Q8NCQ2 148 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 X6R8D5 127 aa11.66□□□□□ -0.54
HDDC2-201ENST00000318787 HYDINQ4G0P3 5121 aa11.65□□□□□ -0.54
HDDC2-201ENST00000318787 ZNF705EA8MWA4 302 aaPredicted RBP11.65□□□□□ -0.55
HDDC2-201ENST00000318787 SSNA1O43805 119 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 PRAF2O60831 178 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 ZNF705DP0CH99 300 aaPredicted RBP11.65□□□□□ -0.55
HDDC2-201ENST00000318787 ZNF705BP0CI00 300 aaPredicted RBP11.65□□□□□ -0.55
HDDC2-201ENST00000318787 SULT1A1P50225 295 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 HBG1P69891 147 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 HBG2P69892 147 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 MIC13Q5XKP0 118 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 TMEM252Q8N6L7 170 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 C11orf1Q9H5F2 150 aa11.65□□□□□ -0.55
HDDC2-201ENST00000318787 PLECQ15149 4684 aaKnown RBP11.65□□□□□ -0.55
HDDC2-201ENST00000318787 A0A0J9YX75 114 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 RLN2P04090 185 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 HLA-DMBP28068 263 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 EMP1P54849 157 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 PSG9Q00887 426 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 C10orf113Q5VZT2 155 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 Q6ZRG5 221 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 C17orf77Q96MU5 243 aa11.64□□□□□ -0.55
HDDC2-201ENST00000318787 H3BTX0 84 aa11.63□□□□□ -0.55
HDDC2-201ENST00000318787 FGF7P21781 194 aa11.63□□□□□ -0.55
HDDC2-201ENST00000318787 S100A11P31949 105 aa11.63□□□□□ -0.55
HDDC2-201ENST00000318787 C4orf48Q5BLP8 95 aa11.63□□□□□ -0.55
HDDC2-201ENST00000318787 PXDC1Q5TGL8 231 aa11.63□□□□□ -0.55
HDDC2-201ENST00000318787 SPATA31B1PQ5VZV4 182 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms