RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 FXYD7P58549 80 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 IGHV2-26A0A0B4J1V2 119 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 SRRM5B3KS81 715 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 PPP1R27Q86WC6 154 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 LSM4Q9Y4Z0 139 aaKnown RBP9.43□□□□□ -0.9
VPS39-201ENST00000318006 PLXNA4Q9HCM2 1894 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 VOPP1Q96AW1 172 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 TOMM7Q9P0U1 55 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 IGHV3OR16-10A0A075B7F0 116 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 IGHV1-46P01743 117 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 IGLL1P15814 213 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 FOXL2NBQ6ZUU3 175 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 DUX5Q96PT3 197 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 NPFFR1Q9GZQ6 430 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 SPTAN1Q13813 2472 aaKnown RBP9.42□□□□□ -0.9
VPS39-201ENST00000318006 SELLP14151 372 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 GFRA4Q9GZZ7 299 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 KLF12Q9Y4X4 402 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 GGTLC3B5MD39 225 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 EXOC3-AS1Q8N2X6 119 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 ANAPC10Q9UM13 185 aa9.42□□□□□ -0.9
VPS39-201ENST00000318006 COL6A6A6NMZ7 2263 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 CDPF1Q6NVV7 123 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 F8W1H4 67 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 CLEC19AQ6UXS0 136 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 ZNF48Q96MX3 618 aaPredicted RBP9.41□□□□□ -0.9
VPS39-201ENST00000318006 PMS2P5A8MQ11 134 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 ETV2O00321 342 aaPredicted RBP9.41□□□□□ -0.9
VPS39-201ENST00000318006 ETDBQ3ZM63 59 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 LIME1Q9H400 295 aa9.41□□□□□ -0.9
VPS39-201ENST00000318006 PHF3Q92576 2039 aaKnown RBP9.41□□□□□ -0.9
VPS39-201ENST00000318006 NBR2O15453 112 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 MLNRO43193 412 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TOMM40O96008 361 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TMEM158Q8WZ71 300 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TMEM133Q9H2Q1 129 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 PSPNO60542 156 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 GHRHP01286 108 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 C5orf24Q7Z6I8 188 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TNFRSF14Q92956 283 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TRGV9Q99603 122 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 KIR2DL5BA0A0G2JN68 375 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 KIR2DL5BA0A0G2JPC4 375 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 FNDC10F2Z333 226 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 CD28P10747 220 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 KIR2DL5AQ8N109 375 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 CITED1Q99966 193 aa9.4□□□□□ -0.9
VPS39-201ENST00000318006 TRAV3A0A0B4J244 114 aa9.4□□□□□ -0.91
VPS39-201ENST00000318006 GAGE12HA6NDE8 117 aa9.4□□□□□ -0.91
VPS39-201ENST00000318006 CD7P09564 240 aa9.4□□□□□ -0.91
VPS39-201ENST00000318006 MYO7BQ6PIF6 2116 aa9.4□□□□□ -0.91
VPS39-201ENST00000318006 C9JAW5 83 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 COX8AP10176 69 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 ZNF562Q6V9R5 426 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 C1orf122Q6ZSJ8 110 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 PPDPFLQ8WWR9 84 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 EDA2RQ9HAV5 297 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 ZNF581Q9P0T4 197 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 IGHG3P01860 377 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 ZNF726P1Q15940 193 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 ASCL4Q6XD76 172 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 ZNF329Q86UD4 541 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 SCRT1Q9BWW7 348 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 IGHV3-64A0A075B6Q5 118 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 LY6G6EA0A0G2JKS1 128 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 U3KQA8 63 aa9.39□□□□□ -0.91
VPS39-201ENST00000318006 IGKV2-40A0A087WW87 121 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 IGKV3D-20A0A0C4DH25 116 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 IGKV2D-40P01614 121 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 LGALS1P09382 135 aaKnown RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 SLAQ13239 276 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 MORN3Q6PF18 240 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 LHFPL4Q7Z7J7 247 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 AMN1Q8IY45 258 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 LYPD6BQ8NI32 183 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 FAM168AQ92567 244 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 RPUSD1Q9UJJ7 312 aaKnown RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 PKDREJQ9NTG1 2253 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 LINC00473A8K010 186 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 LYNX1G3V0Z9 82 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 LYNX1P0DP58 116 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 PAX9P55771 341 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 C10orf55Q5SWW7 151 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 BVES-AS1Q5T3Y7 98 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 C9orf153Q5TBE3 101 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 TRBV20-1A0A075B6N2 111 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 SH2D1AO60880 128 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 AZU1P20160 251 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 COA6Q5JTJ3 125 aaKnown RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 DUX3Q96PT4 197 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 TICRRQ7Z2Z1 1910 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 A0A1W2PPM0 123 aa9.38□□□□□ -0.91
VPS39-201ENST00000318006 MBD3L4A6NDZ8 208 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 MBD3L3A6NE82 208 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 MBD3L5A6NJ08 208 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 MBD3L2Q8NHZ7 208 aaPredicted RBP9.38□□□□□ -0.91
VPS39-201ENST00000318006 DOCK9Q9BZ29 2069 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 CT83Q5H943 113 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 LINC00479Q96M42 142 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms