RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SS18Q15532 418 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 SPXQ9BT56 116 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 TSSC4Q9Y5U2 329 aaPredicted RBP11.42□□□□□ -0.58
CSPG4-201ENST00000308508 TRBV7-1A0A0A6YYK4 115 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 PAQR4Q8N4S7 273 aaPredicted RBP11.42□□□□□ -0.58
CSPG4-201ENST00000308508 EP300Q09472 2414 aaPredicted RBP11.42□□□□□ -0.58
CSPG4-201ENST00000308508 SRD5A1P18405 259 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 GAGE1Q13065 139 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 NCOR1O75376 2440 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 LCTP09848 1927 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 EREGO14944 169 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 LHFPL1Q86WI0 220 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 SLAQ13239 276 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 SPATA31B1PQ5VZV4 182 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 POLR3KQ9Y2Y1 108 aaPredicted RBP11.41□□□□□ -0.58
CSPG4-201ENST00000308508 WNT2P09544 360 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 IL18BPO95998 194 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 CELA3AP09093 270 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 C9orf139Q6ZV77 190 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 C1orf159Q96HA4 380 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 A0A1B0GWJ7 208 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 TIAF1O95411 115 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 BMPERQ8N8U9 685 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 TIMM23O14925 209 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 TMEM14EPQ6UXP3 125 aa11.41□□□□□ -0.58
CSPG4-201ENST00000308508 SP7Q8TDD2 431 aaPredicted RBP11.41□□□□□ -0.58
CSPG4-201ENST00000308508 SUPT4H1P63272 117 aaKnown RBP11.4□□□□□ -0.58
CSPG4-201ENST00000308508 TCF15Q12870 199 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 TRGV1A0A0A0MS02 117 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 NOTCH3Q9UM47 2321 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 C14orf178Q8N769 122 aaPredicted RBP11.4□□□□□ -0.58
CSPG4-201ENST00000308508 WFDC12Q8WWY7 111 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 ZNF837Q96EG3 531 aaPredicted RBP11.4□□□□□ -0.58
CSPG4-201ENST00000308508 K7EP13 123 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 ATP1A1-AS1Q5TC04 95 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 LCNL1Q6ZST4 164 aa11.4□□□□□ -0.58
CSPG4-201ENST00000308508 LILRA1O75019 489 aa11.4□□□□□ -0.59
CSPG4-201ENST00000308508 NMSQ5H8A3 153 aa11.4□□□□□ -0.59
CSPG4-201ENST00000308508 TRAV41A0A0B4J266 112 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 TRAV40A0A0B4J280 105 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 SP9P0CG40 484 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 UBR3Q6ZT12 1888 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 STPG4Q8N801 248 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 TMEM141Q96I45 108 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 IGKV1D-8A0A087WSZ0 117 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 FNDC10F2Z333 226 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 AMN1Q8IY45 258 aa11.39□□□□□ -0.59
CSPG4-201ENST00000308508 BRCA1P38398 1863 aaKnown RBP11.39□□□□□ -0.59
CSPG4-201ENST00000308508 K7EP34 96 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 CD24P25063 80 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 GFI1Q99684 422 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 LIME1Q9H400 295 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 GAGE12HA6NDE8 117 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 CDKN1AP38936 164 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 TCTEX1D4Q5JR98 221 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 ZNF114Q8NC26 417 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 DSCR8Q96T75 97 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 SBF2Q86WG5 1849 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 TRAV13-1A0A0B4J241 112 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 PMVKQ15126 192 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 ZNF329Q86UD4 541 aa11.38□□□□□ -0.59
CSPG4-201ENST00000308508 TRPT1Q86TN4 253 aaKnown RBP11.37□□□□□ -0.59
CSPG4-201ENST00000308508 RNF5Q99942 180 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 LYL1P12980 280 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 UBE2DNLQ8IWF7 75 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 TMEM126AQ9H061 195 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 PDE6HQ13956 83 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 SMKR1H3BMG3 65 aa11.37□□□□□ -0.59
CSPG4-201ENST00000308508 IGHV2-26A0A0B4J1V2 119 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 IGHV1-24A0A0C4DH33 117 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 OR11H6Q8NGC7 330 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 TRPM7Q96QT4 1865 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 SCN10AQ9Y5Y9 1956 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 C1QTNF4Q9BXJ3 329 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 TMEM75Q8N9X5 138 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 RFNGQ9Y644 331 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 A0A1W2PPM0 123 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 C3orf36Q3SXR2 165 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 MRPL14Q6P1L8 145 aaKnown RBP11.36□□□□□ -0.59
CSPG4-201ENST00000308508 Q8TAT8 98 aa11.36□□□□□ -0.59
CSPG4-201ENST00000308508 GTF3C1Q12789 2109 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 PSCAO43653 123 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 RNASE6Q93091 150 aaKnown RBP11.35□□□□□ -0.59
CSPG4-201ENST00000308508 PRB3Q04118 309 aaPredicted RBP11.35□□□□□ -0.59
CSPG4-201ENST00000308508 IGHG3P01860 377 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 FGF6P10767 208 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 RPUSD1Q9UJJ7 312 aaKnown RBP11.35□□□□□ -0.59
CSPG4-201ENST00000308508 AZU1P20160 251 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 Q86TA4 180 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 EML6Q6ZMW3 1958 aa11.35□□□□□ -0.59
CSPG4-201ENST00000308508 IGLV3-32A0A0A0MS00 114 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 THBDP07204 575 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 DEFB104AQ8WTQ1 72 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 MCRIP2Q9BUT9 160 aaKnown RBP11.34□□□□□ -0.59
CSPG4-201ENST00000308508 FCN3O75636 299 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 HAMPP81172 84 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 ETDBQ3ZM63 59 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 IGHV2-70P01814 119 aa11.34□□□□□ -0.59
CSPG4-201ENST00000308508 NPSP0C0P6 89 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms