RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TFF2Q03403 129 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 ZNF726P1Q15940 193 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 RSPO1Q2MKA7 263 aaPredicted RBP5.29□□□□□ -1.56
VPS35-201ENST00000299138 OR11H6Q8NGC7 330 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 SPATA25Q9BR10 227 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 LIME1Q9H400 295 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 SMPXQ9UHP9 88 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 OR9G9P0C7N8 305 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 COX6A1P12074 109 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 SNRPD3P62318 126 aaKnown RBP5.28□□□□□ -1.56
VPS35-201ENST00000299138 ZNRF1Q8ND25 227 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TSKUQ8WUA8 353 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 SPANXDQ9BXN6 97 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 C14orf132Q9NPU4 83 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TRGV2A0A075B6R0 118 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 IGHV2-26A0A0B4J1V2 119 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TFF3Q07654 80 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 CT55Q8WUE5 264 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 SPANXCQ9NY87 97 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 CD69Q07108 199 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TEX45Q8NA69 505 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 FMC1Q96HJ9 113 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 LINC01587Q99440 93 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 COLQQ9Y215 455 aaPredicted RBP5.28□□□□□ -1.56
VPS35-201ENST00000299138 C8orf31Q8N9H6 132 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 ITLN2Q8WWU7 325 aaPredicted RBP5.28□□□□□ -1.56
VPS35-201ENST00000299138 VGLL1Q99990 258 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 RETNQ9HD89 108 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 SNRNP200O75643 2136 aaKnown RBP5.28□□□□□ -1.56
VPS35-201ENST00000299138 ASXL3Q9C0F0 2248 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TRGV5A0A0B4J1U4 118 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 TRBV6-1A0A0K0K1D8 114 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 C15orf61A6NNL5 157 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 F8W1H4 67 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 IGHG4P01861 327 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 CCL3P10147 92 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 NPPCP23582 126 aa5.28□□□□□ -1.56
VPS35-201ENST00000299138 HEATR1Q9H583 2144 aaKnown RBP5.27□□□□□ -1.57
VPS35-201ENST00000299138 BRCA2P51587 3418 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 IGHV2-70DA0A0C4DH43 119 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 NBEAP1P0C6P0 100 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 Q6P435 159 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 CRIP3Q6Q6R5 217 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 TREML4Q6UXN2 200 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 LEAP2Q969E1 77 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 SPTBP11277 2137 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 MTCL1Q9Y4B5 1905 aaKnown RBP5.27□□□□□ -1.57
VPS35-201ENST00000299138 C12orf77C9JDV5 145 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 SPATA12Q7Z6I5 190 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 AMN1Q8IY45 258 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 ABCA7Q8IZY2 2146 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 IGHV3OR16-8A0A075B7F1 116 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 CD7P09564 240 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 INAFM2P0DMQ5 153 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 ATP5G2Q06055 141 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 LAGE3Q14657 143 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 SLC25A48Q6ZT89 311 aaKnown RBP5.27□□□□□ -1.57
VPS35-201ENST00000299138 TMEM256Q8N2U0 113 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 OR13A1Q8NGR1 328 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 CSTL1Q9H114 145 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 TRAV26-1A0A087WT03 109 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 C9orf118A6NHY6 69 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 PRCDQ00LT1 54 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 UTF1Q5T230 341 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 PRSS57Q6UWY2 283 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 UCN2Q96RP3 112 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 SLC25A39Q9BZJ4 359 aaPredicted RBP5.27□□□□□ -1.57
VPS35-201ENST00000299138 DENND4CQ5VZ89 1909 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 IGKV1-6A0A0C4DH72 117 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 RNASE2P10153 161 aaKnown RBP5.27□□□□□ -1.57
VPS35-201ENST00000299138 B3GALT5-AS1P59052 145 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 DSCR8Q96T75 97 aa5.27□□□□□ -1.57
VPS35-201ENST00000299138 FAM106AQ4KMX7 169 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 RNF7Q9UBF6 113 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 H3BMG7 143 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 LYPD1Q8N2G4 141 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 C3orf79P0CE67 100 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 MIR17HGQ75NE6 70 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 ASCL5Q7RTU5 278 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 VDAC2P45880 294 aaPredicted RBP5.26□□□□□ -1.57
VPS35-201ENST00000299138 STPG4Q8N801 248 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 Q9H3A6 140 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 IGHV3-73A0A0B4J1V6 119 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 A0A1B0GX51 115 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 D6R8Y8 96 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 ACYP1P07311 99 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 PRR20EP86478 221 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 PRR20CP86479 221 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 PRR20DP86480 221 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 PRR20BP86481 221 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 PRR20AP86496 221 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 MUSTN1Q8IVN3 82 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 OCC1Q8TAD7 63 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 RNF5Q99942 180 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 KIF26BQ2KJY2 2108 aa5.26□□□□□ -1.57
VPS35-201ENST00000299138 IGHV5-10-1A0A0J9YXX1 117 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 C15orf62A8K5M9 175 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 LILRA1O75019 489 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 SP9P0CG40 484 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 LY6EQ16553 131 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms