RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 NHP2Q9NX24 153 aaKnown RBP13.18□□□□□ -0.3
CTCF-201ENST00000264010 COL6A6A6NMZ7 2263 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 A0A1W2PRE2 83 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 TCRBV4S1A1TA0A5B7 111 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 A1L4Q6 167 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 CT45A10P0DMU9 189 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 NEU4Q8WWR8 484 aaPredicted RBP13.18□□□□□ -0.3
CTCF-201ENST00000264010 PGLYRP4Q96LB8 373 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 H3BTX0 84 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 COL8A2P25067 703 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 COL8A1P27658 744 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 RBX1P62877 108 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 CCDC144NLQ6NUI1 221 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 IL36BQ9NZH7 164 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 MOSP00540 346 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 ACTL10Q5JWF8 245 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 DPM3Q9P2X0 92 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 CTSZQ9UBR2 303 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 HIGD1AQ9Y241 93 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 PIEZO2Q9H5I5 2752 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 F2Z2F3 143 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 C1orf229Q6ZS94 237 aaPredicted RBP13.17□□□□□ -0.3
CTCF-201ENST00000264010 C8orf31Q8N9H6 132 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 EAF1Q96JC9 268 aaPredicted RBP13.17□□□□□ -0.3
CTCF-201ENST00000264010 TSSC4Q9Y5U2 329 aaPredicted RBP13.17□□□□□ -0.3
CTCF-201ENST00000264010 CFAP47Q6ZTR5 3102 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 LINC00305Q7Z4B0 112 aa13.17□□□□□ -0.3
CTCF-201ENST00000264010 GEMIN7Q9H840 131 aaKnown RBP13.17□□□□□ -0.3
CTCF-201ENST00000264010 MALRD1Q5VYJ5 2156 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 TRAV8-6A0A0B4J262 113 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 AREGP15514 252 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PRR20EP86478 221 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PRR20CP86479 221 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PRR20DP86480 221 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PRR20BP86481 221 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PRR20AP86496 221 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 TMEM136Q6ZRR5 245 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PPP1R27Q86WC6 154 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 FAM231BA6NCW3 169 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 SS18L2Q9UHA2 77 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PLXNB1O43157 2135 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 PTPRQQ9UMZ3 2332 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 GPX1P07203 203 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 EMP1P54849 157 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 OR4F17Q8NGA8 305 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 SLC25A33Q9BSK2 321 aa13.16□□□□□ -0.3
CTCF-201ENST00000264010 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 C9JCJ5 164 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 SMIM13P0DJ93 91 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 FOXL1Q12952 345 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 IGHV1-3A0A0C4DH29 117 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 P01737 135 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 PGPA6NDG6 321 aa13.15□□□□□ -0.3
CTCF-201ENST00000264010 DSCAML1Q8TD84 2053 aa13.15□□□□□ -0.31
CTCF-201ENST00000264010 A0A0G2JLM5 398 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 AMY1AP04745 511 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 DIAPH2-AS1Q14236 149 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 COL25A1Q9BXS0 654 aaPredicted RBP13.14□□□□□ -0.31
CTCF-201ENST00000264010 HIST1H4GQ99525 98 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 LY96Q9Y6Y9 160 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 SH2D7A6NKC9 451 aaPredicted RBP13.14□□□□□ -0.31
CTCF-201ENST00000264010 K7EP13 123 aa13.14□□□□□ -0.31
CTCF-201ENST00000264010 TRAV5A0A0B4J249 113 aa13.13□□□□□ -0.31
CTCF-201ENST00000264010 BUB1B-PAK6H3BSN5 160 aa13.13□□□□□ -0.31
CTCF-201ENST00000264010 SRSF12Q8WXF0 261 aaKnown RBP13.13□□□□□ -0.31
CTCF-201ENST00000264010 ETDBQ3ZM63 59 aa13.13□□□□□ -0.31
CTCF-201ENST00000264010 A0A1W2PPI3 338 aa13.13□□□□□ -0.31
CTCF-201ENST00000264010 LCNL1Q6ZST4 164 aa13.13□□□□□ -0.31
CTCF-201ENST00000264010 ANKHD1Q8IWZ3 2542 aaKnown RBP13.13□□□□□ -0.31
CTCF-201ENST00000264010 ZNF138P52744 262 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 WT1-ASQ06250 92 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 C1RLQ9NZP8 487 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 SIGLEC9Q9Y336 463 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 TNCP24821 2201 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 HCFC1P51610 2035 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 TRAV26-1A0A087WT03 109 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 PYYP10082 97 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 NPPCP23582 126 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 PRSS46E5RG02 174 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 PEX7O00628 323 aa13.12□□□□□ -0.31
CTCF-201ENST00000264010 SP5Q6BEB4 398 aaPredicted RBP13.12□□□□□ -0.31
CTCF-201ENST00000264010 TLN1Q9Y490 2541 aaKnown RBP13.11□□□□□ -0.31
CTCF-201ENST00000264010 KIR2DL5BA0A0G2JN68 375 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 KIR2DL5BA0A0G2JPC4 375 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 NBEAP1P0C6P0 100 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 KIR2DL5AQ8N109 375 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 YPEL4Q96NS1 127 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 RNF5Q99942 180 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 TRBV9A0A0B4J1U6 114 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 TIMM23O14925 209 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 IGLL1P15814 213 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 OSTCQ9NRP0 149 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 HSD52Q0P140 79 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 ASPHD1Q5U4P2 390 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 ATP6V0BQ99437 205 aa13.11□□□□□ -0.31
CTCF-201ENST00000264010 C5orf17Q8NAS9 161 aa13.1□□□□□ -0.31
CTCF-201ENST00000264010 C11orf52Q96A22 123 aa13.1□□□□□ -0.31
CTCF-201ENST00000264010 FXYD7P58549 80 aa13.1□□□□□ -0.31
CTCF-201ENST00000264010 ZNF114Q8NC26 417 aa13.1□□□□□ -0.31
CTCF-201ENST00000264010 PYGO2Q9BRQ0 406 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms