RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 LYNX1P0DP58 116 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 PNRC2Q9NPJ4 139 aaKnown RBP10.46□□□□□ -0.74
USP40-201ENST00000251722 H3BUX3 64 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 NAPSAO96009 420 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 COL4A6Q14031 1691 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 BVES-AS1Q5T3Y7 98 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 C3orf56Q8N813 242 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 RBMY1BA6NDE4 496 aaKnown RBP10.45□□□□□ -0.74
USP40-201ENST00000251722 RBMY1EA6NEQ0 496 aaKnown RBP10.45□□□□□ -0.74
USP40-201ENST00000251722 RBMY1DP0C7P1 496 aaKnown RBP10.45□□□□□ -0.74
USP40-201ENST00000251722 RBMY1A1P0DJD3 496 aaKnown RBP10.45□□□□□ -0.74
USP40-201ENST00000251722 RBMY1CP0DJD4 496 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 MIR17HGQ75NE6 70 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 PRSS33Q8NF86 280 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 LINC00477Q96M19 166 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 VGLL1Q99990 258 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 TRGV4A0A0C4DH28 118 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 CD55P08174 381 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 CD7P09564 240 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 IGKV1D-13A0A0B4J2D9 117 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 IGKV1-13P0DP09 117 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 ORMDL2Q53FV1 153 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 CD177Q8N6Q3 437 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 MRAPQ8TCY5 172 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 SCGB3A1Q96QR1 104 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 FOXC2Q99958 501 aa10.45□□□□□ -0.74
USP40-201ENST00000251722 SPANXB1Q9NS25 103 aaPredicted RBP10.45□□□□□ -0.74
USP40-201ENST00000251722 E9PQ18 207 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 CLUHP3Q96NS8 147 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 IGHV3OR16-13A0A075B7E8 117 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 IGHV3-74A0A0B4J1X5 117 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 H0YJW9 148 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 IFI27P40305 119 aaPredicted RBP10.44□□□□□ -0.74
USP40-201ENST00000251722 IGHV3-66A0A0C4DH42 116 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 LY6G6EA0A0G2JKS1 128 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 H0YIZ8 118 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 H3BTX0 84 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 ERG28Q9UKR5 140 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 U3KQA8 63 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 E7EQL1 145 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 COA6Q5JTJ3 125 aaKnown RBP10.44□□□□□ -0.74
USP40-201ENST00000251722 PSG8Q9UQ74 426 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 hDV102S1A0JD36 115 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 IGKCP01834 107 aa10.44□□□□□ -0.74
USP40-201ENST00000251722 IGHV4-39P01824 125 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 C15orf32Q32M92 178 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 IGHV3-49A0A0A0MS15 119 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 IGHV3-48P01763 117 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 CNTFRP26992 372 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 PAQR4Q8N4S7 273 aaPredicted RBP10.43□□□□□ -0.74
USP40-201ENST00000251722 ZNF319Q9P2F9 582 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
USP40-201ENST00000251722 MALP21145 153 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 DUX4L9Q6RFH8 374 aaPredicted RBP10.43□□□□□ -0.74
USP40-201ENST00000251722 UBE2DNLQ8IWF7 75 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 C2orf82Q6UX34 121 aa10.43□□□□□ -0.74
USP40-201ENST00000251722 KLF17Q5JT82 389 aaPredicted RBP10.42□□□□□ -0.74
USP40-201ENST00000251722 Q6P435 159 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 IGKV1-12A0A0C4DH73 117 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 IGKV1D-12P01611 117 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 MST1LQ2TV78 715 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 LHFPL1Q86WI0 220 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 WFDC12Q8WWY7 111 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 INSP01308 110 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 SUPT4H1P63272 117 aaKnown RBP10.42□□□□□ -0.74
USP40-201ENST00000251722 LCN12Q6JVE5 192 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 C8orf86Q6ZUL3 223 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 PIP4P2Q8N4L2 257 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 BPESC1Q9GZL8 116 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 ABCA7Q8IZY2 2146 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 SRSF1Q07955 248 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP40-201ENST00000251722 LY96Q9Y6Y9 160 aa10.42□□□□□ -0.74
USP40-201ENST00000251722 CDPF1Q6NVV7 123 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 ZCCHC24Q8N2G6 241 aaKnown RBP10.41□□□□□ -0.74
USP40-201ENST00000251722 IGHV1-69DA0A0B4J2H0 117 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 IGHV1-69P01742 117 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 LGALS1P09382 135 aaKnown RBP10.41□□□□□ -0.74
USP40-201ENST00000251722 Q6ZWC4 215 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 ZNF114Q8NC26 417 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 FAM110DQ8TAY7 271 aaPredicted RBP10.41□□□□□ -0.74
USP40-201ENST00000251722 SCO2A0A1W2PP80 73 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 SIVA1O15304 175 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 HTN3P15516 51 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 EGR1P18146 543 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 KLRD1Q13241 179 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 SIGLEC9Q9Y336 463 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 RFNGQ9Y644 331 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 S4R3C0 116 aa10.41□□□□□ -0.74
USP40-201ENST00000251722 NDUFB8O95169 186 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 LYL1P12980 280 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 PFN1P07737 140 aaKnown RBP10.4□□□□□ -0.74
USP40-201ENST00000251722 CFPP27918 469 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 FOXG1P55316 489 aaPredicted RBP10.4□□□□□ -0.74
USP40-201ENST00000251722 IFI27L1Q96BM0 104 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 GNG5P63218 68 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 TMEM170BQ5T4T1 132 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 C1orf122Q6ZSJ8 110 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 LINC00311Q8N616 119 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 TEX48A0A1B0GUV7 120 aa10.4□□□□□ -0.74
USP40-201ENST00000251722 CHAC1Q9BUX1 264 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms