RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF341Q9BYN7 854 aa24.32■■□□□ 1.48
CLN3-262ENST00000637699 USP44Q9H0E7 712 aa24.32■■□□□ 1.48
CLN3-262ENST00000637699 ZSWIM8A7E2V4 1837 aa24.32■■□□□ 1.48
CLN3-262ENST00000637699 INPP5BP32019 993 aa24.31■■□□□ 1.48
CLN3-262ENST00000637699 PTPRCP08575 1304 aa24.31■■□□□ 1.48
CLN3-262ENST00000637699 KIF16BQ96L93 1317 aa24.31■■□□□ 1.48
CLN3-262ENST00000637699 PPATQ06203 517 aa24.3■■□□□ 1.48
CLN3-262ENST00000637699 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.3■■□□□ 1.48
CLN3-262ENST00000637699 WDR66Q8TBY9 1149 aa24.3■■□□□ 1.48
CLN3-262ENST00000637699 SLC5A1P13866 664 aa24.29■■□□□ 1.48
CLN3-262ENST00000637699 TCP10Q12799 353 aa24.29■■□□□ 1.48
CLN3-262ENST00000637699 FAM151AQ8WW52 585 aa24.29■■□□□ 1.48
CLN3-262ENST00000637699 CPA4Q9UI42 421 aa24.29■■□□□ 1.48
CLN3-262ENST00000637699 ZNF521Q96K83 1311 aa24.29■■□□□ 1.48
CLN3-262ENST00000637699 RPAP1Q9BWH6 1393 aaPredicted RBP24.29■■□□□ 1.48
CLN3-262ENST00000637699 EYA2O00167 538 aa24.28■■□□□ 1.48
CLN3-262ENST00000637699 GNRH1P01148 92 aa24.28■■□□□ 1.48
CLN3-262ENST00000637699 C17orf99Q6UX52 265 aa24.28■■□□□ 1.48
CLN3-262ENST00000637699 SSH1Q8WYL5 1049 aa24.28■■□□□ 1.48
CLN3-262ENST00000637699 LPIN2Q92539 896 aa24.28■■□□□ 1.48
CLN3-262ENST00000637699 RFX5P48382 616 aaPredicted RBP24.27■■□□□ 1.48
CLN3-262ENST00000637699 DIXDC1Q155Q3 683 aa24.27■■□□□ 1.48
CLN3-262ENST00000637699 CDC42EP5Q6NZY7 148 aa24.27■■□□□ 1.48
CLN3-262ENST00000637699 DAGLAQ9Y4D2 1042 aa24.27■■□□□ 1.48
CLN3-262ENST00000637699 PDHXO00330 501 aa24.26■■□□□ 1.47
CLN3-262ENST00000637699 PRMT2P55345 433 aa24.26■■□□□ 1.47
CLN3-262ENST00000637699 NFIAQ12857 509 aa24.26■■□□□ 1.47
CLN3-262ENST00000637699 ANKRD23Q86SG2 305 aa24.26■■□□□ 1.47
CLN3-262ENST00000637699 COLQQ9Y215 455 aaPredicted RBP24.26■■□□□ 1.47
CLN3-262ENST00000637699 CTGFP29279 349 aa24.25■■□□□ 1.47
CLN3-262ENST00000637699 PSMC4P43686 418 aa24.25■■□□□ 1.47
CLN3-262ENST00000637699 FXR1P51114 621 aaKnown RBP eCLIP24.25■■□□□ 1.47
CLN3-262ENST00000637699 ZNF112Q9UJU3 913 aa24.25■■□□□ 1.47
CLN3-262ENST00000637699 AK9Q5TCS8 1911 aa24.25■■□□□ 1.47
CLN3-262ENST00000637699 CEP290O15078 2479 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 PRDX5P30044 214 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 ATG9AQ7Z3C6 839 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 TRIM47Q96LD4 638 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 SIL1Q9H173 461 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 KCNH4Q9UQ05 1017 aa24.24■■□□□ 1.47
CLN3-262ENST00000637699 MYH13Q9UKX3 1938 aa24.23■■□□□ 1.47
CLN3-262ENST00000637699 ZNF316A6NFI3 1004 aaPredicted RBP24.23■■□□□ 1.47
CLN3-262ENST00000637699 FMNL1O95466 1100 aaPredicted RBP24.23■■□□□ 1.47
CLN3-262ENST00000637699 MTFR1Q15390 333 aa24.23■■□□□ 1.47
CLN3-262ENST00000637699 USP40Q9NVE5 1235 aa24.23■■□□□ 1.47
CLN3-262ENST00000637699 FAM198AQ9UFP1 575 aa24.23■■□□□ 1.47
CLN3-262ENST00000637699 SRRDQ9UH36 339 aa24.23■■□□□ 1.47
CLN3-262ENST00000637699 H0YGN5 161 aa24.22■■□□□ 1.47
CLN3-262ENST00000637699 LDHBP07195 334 aaKnown RBP24.22■■□□□ 1.47
CLN3-262ENST00000637699 OSBPP22059 807 aa24.22■■□□□ 1.47
CLN3-262ENST00000637699 HOXD10P28358 340 aa24.21■■□□□ 1.47
CLN3-262ENST00000637699 MOGSQ13724 837 aa24.21■■□□□ 1.47
CLN3-262ENST00000637699 ATP2B3Q16720 1220 aa24.21■■□□□ 1.47
CLN3-262ENST00000637699 ZFPM1Q8IX07 1006 aa24.21■■□□□ 1.47
CLN3-262ENST00000637699 RAET1EQ8TD07 263 aa24.21■■□□□ 1.47
CLN3-262ENST00000637699 GNL3LQ9NVN8 582 aaKnown RBP24.21■■□□□ 1.47
CLN3-262ENST00000637699 ADGRA2Q96PE1 1338 aa24.2■■□□□ 1.46
CLN3-262ENST00000637699 E9PSI1 815 aa24.2■■□□□ 1.46
CLN3-262ENST00000637699 NOL9Q5SY16 702 aaKnown RBP24.2■■□□□ 1.46
CLN3-262ENST00000637699 CEP126Q9P2H0 1117 aa24.2■■□□□ 1.46
CLN3-262ENST00000637699 GRK4P32298 578 aa24.19■■□□□ 1.46
CLN3-262ENST00000637699 SHISA4Q96DD7 197 aa24.19■■□□□ 1.46
CLN3-262ENST00000637699 MYPNQ86TC9 1320 aa24.18■■□□□ 1.46
CLN3-262ENST00000637699 UBTFL1P0CB47 393 aaPredicted RBP24.18■■□□□ 1.46
CLN3-262ENST00000637699 CYP2C8P10632 490 aa24.18■■□□□ 1.46
CLN3-262ENST00000637699 PHKA1P46020 1223 aa24.18■■□□□ 1.46
CLN3-262ENST00000637699 BIN2Q9UBW5 565 aaPredicted RBP24.18■■□□□ 1.46
CLN3-262ENST00000637699 CIAO1O76071 339 aa24.17■■□□□ 1.46
CLN3-262ENST00000637699 GPAT2Q6NUI2 795 aa24.17■■□□□ 1.46
CLN3-262ENST00000637699 DPF3Q92784 378 aa24.17■■□□□ 1.46
CLN3-262ENST00000637699 PARK7Q99497 189 aaKnown RBP24.17■■□□□ 1.46
CLN3-262ENST00000637699 SMC4Q9NTJ3 1288 aa24.17■■□□□ 1.46
CLN3-262ENST00000637699 DENND2AQ9ULE3 1009 aa24.17■■□□□ 1.46
CLN3-262ENST00000637699 CXCL11O14625 94 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 RGS3P49796 1198 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 SLFN5Q08AF3 891 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 FBXO3Q9UK99 471 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 ZHX2Q9Y6X8 837 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 TRIOBPQ9H2D6 2365 aa24.16■■□□□ 1.46
CLN3-262ENST00000637699 SALL1Q9NSC2 1324 aa24.15■■□□□ 1.46
CLN3-262ENST00000637699 CCL5P13501 91 aa24.15■■□□□ 1.46
CLN3-262ENST00000637699 ALDH1L2Q3SY69 923 aa24.15■■□□□ 1.46
CLN3-262ENST00000637699 PICK1Q9NRD5 415 aa24.15■■□□□ 1.46
CLN3-262ENST00000637699 PA2G4Q9UQ80 394 aaKnown RBP24.15■■□□□ 1.46
CLN3-262ENST00000637699 PHF20L1A8MW92 1017 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 SEMA3EO15041 775 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 BCRP11274 1271 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 ADORA1P30542 326 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 FCGRTP55899 365 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 PRKCZQ05513 592 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 ZSCAN29Q8IWY8 852 aaPredicted RBP24.14■■□□□ 1.45
CLN3-262ENST00000637699 SCYL3Q8IZE3 742 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 NKX2-3Q8TAU0 364 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 RNF208Q9H0X6 261 aa24.14■■□□□ 1.45
CLN3-262ENST00000637699 GJB1P08034 283 aa24.13■■□□□ 1.45
CLN3-262ENST00000637699 IL15P40933 162 aaPredicted RBP24.13■■□□□ 1.45
CLN3-262ENST00000637699 CHRDL2Q6WN34 429 aa24.13■■□□□ 1.45
CLN3-262ENST00000637699 GADL1Q6ZQY3 521 aa24.13■■□□□ 1.45
CLN3-262ENST00000637699 A0A0G2JLL6 359 aaPredicted RBP24.12■■□□□ 1.45
CLN3-262ENST00000637699 ENTPD3O75355 529 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms