RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MROH7-TTC4A0A0A0MT08 1334 aa22.3■■□□□ 1.16
CLN3-259ENST00000637551 ATP5JP18859 108 aa22.29■■□□□ 1.16
CLN3-259ENST00000637551 SUPT20HL1Q3ZLR7 823 aa22.29■■□□□ 1.16
CLN3-259ENST00000637551 NSUN4Q96CB9 384 aaKnown RBP22.29■■□□□ 1.16
CLN3-259ENST00000637551 GPATCH3Q96I76 525 aa22.29■■□□□ 1.16
CLN3-259ENST00000637551 RWDD1Q9H446 243 aaPredicted RBP22.29■■□□□ 1.16
CLN3-259ENST00000637551 CYP2E1P05181 493 aaPredicted RBP22.28■■□□□ 1.16
CLN3-259ENST00000637551 MECOMQ03112 1051 aa22.28■■□□□ 1.16
CLN3-259ENST00000637551 BEGAINQ9BUH8 593 aa22.28■■□□□ 1.16
CLN3-259ENST00000637551 LRP2BPQ9P2M1 347 aa22.28■■□□□ 1.16
CLN3-259ENST00000637551 RFX7Q2KHR2 1363 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 TNRC18O15417 2968 aaPredicted RBP22.27■■□□□ 1.16
CLN3-259ENST00000637551 GPR75-ASB3A0A0A6YYF3 556 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 ECE1P42892 770 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 PI16Q6UXB8 463 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 CAPNS2Q96L46 248 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 IDI2Q9BXS1 227 aa22.27■■□□□ 1.16
CLN3-259ENST00000637551 TDRD3Q9H7E2 651 aaKnown RBP22.27■■□□□ 1.16
CLN3-259ENST00000637551 COL2A1P02458 1487 aaPredicted RBP22.27■■□□□ 1.16
CLN3-259ENST00000637551 MYO5AQ9Y4I1 1855 aaKnown RBP22.26■■□□□ 1.15
CLN3-259ENST00000637551 PLCG2P16885 1265 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 DIXDC1Q155Q3 683 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 MAP3K11Q16584 847 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 SMC5Q8IY18 1101 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 VEZTQ9HBM0 779 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 PCDHAC2Q9Y5I4 1007 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 TTC41PQ6P2S7 1318 aa22.26■■□□□ 1.15
CLN3-259ENST00000637551 CLRN2A0PK11 232 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 APBB1O00213 710 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 ZAP70P43403 619 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 MAP3K12Q12852 859 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 RASA3Q14644 834 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 EXOC6Q8TAG9 804 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 ECHDC1Q9NTX5 307 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 RAI14Q9P0K7 980 aa22.25■■□□□ 1.15
CLN3-259ENST00000637551 ZBTB47Q9UFB7 747 aaPredicted RBP22.25■■□□□ 1.15
CLN3-259ENST00000637551 MYH7P12883 1935 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 ENTPD3O75355 529 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 PPP4CP60510 307 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 CDC42EP5Q6NZY7 148 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 HAUS7Q99871 368 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 FOCADQ5VW36 1801 aa22.24■■□□□ 1.15
CLN3-259ENST00000637551 LAMB1P07942 1786 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 PDE4DIPQ5VU43 2346 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 PPP1R12BO60237 982 aaPredicted RBP22.23■■□□□ 1.15
CLN3-259ENST00000637551 BAG3O95817 575 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 FMR1Q06787 632 aaKnown RBP eCLIP22.23■■□□□ 1.15
CLN3-259ENST00000637551 NAA16Q6N069 864 aaPredicted RBP22.23■■□□□ 1.15
CLN3-259ENST00000637551 CYP4F22Q6NT55 531 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 ARMC9Q7Z3E5 817 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 ZNF384Q8TF68 577 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 FAM151AQ8WW52 585 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 TEPSINQ96N21 525 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 AOX1Q06278 1338 aa22.23■■□□□ 1.15
CLN3-259ENST00000637551 SSC5DA1L4H1 1573 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 HUNKP57058 714 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 TBC1D9Q6ZT07 1266 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 TICAM2Q86XR7 235 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 CCDC102AQ96A19 550 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 NOL10Q9BSC4 688 aaKnown RBP22.22■■□□□ 1.15
CLN3-259ENST00000637551 ZNF408Q9H9D4 720 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 SNRKQ9NRH2 765 aa22.22■■□□□ 1.15
CLN3-259ENST00000637551 ERC2O15083 957 aa22.21■■□□□ 1.15
CLN3-259ENST00000637551 BTDP43251 543 aa22.21■■□□□ 1.15
CLN3-259ENST00000637551 PAXIP1Q6ZW49 1069 aaPredicted RBP22.21■■□□□ 1.15
CLN3-259ENST00000637551 MCOLN1Q9GZU1 580 aa22.21■■□□□ 1.15
CLN3-259ENST00000637551 TSKSQ9UJT2 592 aa22.21■■□□□ 1.15
CLN3-259ENST00000637551 MAP2K2P36507 400 aa22.2■■□□□ 1.14
CLN3-259ENST00000637551 PIH1D3Q9NQM4 214 aaKnown RBP22.2■■□□□ 1.14
CLN3-259ENST00000637551 USP40Q9NVE5 1235 aa22.2■■□□□ 1.14
CLN3-259ENST00000637551 PAG1Q9NWQ8 432 aa22.2■■□□□ 1.14
CLN3-259ENST00000637551 ATRNL1Q5VV63 1379 aa22.2■■□□□ 1.14
CLN3-259ENST00000637551 RHBDL3P58872 404 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 NOGQ13253 232 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 GRM1Q13255 1194 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 LDLRAD1Q5T700 205 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 RGMBQ6NW40 437 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 REM2Q8IYK8 340 aaPredicted RBP22.19■■□□□ 1.14
CLN3-259ENST00000637551 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.19■■□□□ 1.142e-6■■■■■ 40.7
CLN3-259ENST00000637551 SALL3Q9BXA9 1300 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 CDK5RAP2Q96SN8 1893 aa22.19■■□□□ 1.14
CLN3-259ENST00000637551 TCP10L2B9ZVM9 353 aa22.18■■□□□ 1.14
CLN3-259ENST00000637551 SMARCA5O60264 1052 aaPredicted RBP22.18■■□□□ 1.14
CLN3-259ENST00000637551 IDH1O75874 414 aaKnown RBP22.18■■□□□ 1.14
CLN3-259ENST00000637551 GLRX3O76003 335 aaKnown RBP22.18■■□□□ 1.14
CLN3-259ENST00000637551 IREB2P48200 963 aaKnown RBP22.18■■□□□ 1.14
CLN3-259ENST00000637551 DCAF15Q66K64 600 aa22.18■■□□□ 1.14
CLN3-259ENST00000637551 CA12O43570 354 aa22.17■■□□□ 1.14
CLN3-259ENST00000637551 WDHD1O75717 1129 aaPredicted RBP22.17■■□□□ 1.14
CLN3-259ENST00000637551 LRRFIP1Q32MZ4 808 aaKnown RBP22.17■■□□□ 1.14
CLN3-259ENST00000637551 ZSCAN25Q6NSZ9 544 aa22.17■■□□□ 1.14
CLN3-259ENST00000637551 FAM198AQ9UFP1 575 aa22.17■■□□□ 1.14
CLN3-259ENST00000637551 STAP2Q9UGK3 403 aa22.17■■□□□ 1.14
CLN3-259ENST00000637551 CASP8AP2Q9UKL3 1982 aa22.17■■□□□ 1.14
CLN3-259ENST00000637551 OTOFQ9HC10 1997 aa22.16■■□□□ 1.14
CLN3-259ENST00000637551 AK9Q5TCS8 1911 aa22.16■■□□□ 1.14
CLN3-259ENST00000637551 AOC2O75106 756 aa22.16■■□□□ 1.14
CLN3-259ENST00000637551 MX1P20591 662 aa22.16■■□□□ 1.14
CLN3-259ENST00000637551 NBPF12Q5TAG4 269 aaPredicted RBP22.16■■□□□ 1.14
CLN3-259ENST00000637551 TMEM39BQ9GZU3 492 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms