RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 RWDD1Q9H446 243 aaPredicted RBP25.24■■□□□ 1.63
CLN3-240ENST00000631023 USP40Q9NVE5 1235 aa25.24■■□□□ 1.63
CLN3-240ENST00000631023 MROH7-TTC4A0A0A0MT08 1334 aa25.24■■□□□ 1.63
CLN3-240ENST00000631023 MAST2Q6P0Q8 1798 aa25.24■■□□□ 1.63
CLN3-240ENST00000631023 CACNB3P54284 484 aa25.23■■□□□ 1.63
CLN3-240ENST00000631023 TTF1Q15361 905 aaPredicted RBP25.23■■□□□ 1.63
CLN3-240ENST00000631023 PPP1R12BO60237 982 aaPredicted RBP25.22■■□□□ 1.63
CLN3-240ENST00000631023 VEGFBP49765 207 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 NAA16Q6N069 864 aaPredicted RBP25.22■■□□□ 1.63
CLN3-240ENST00000631023 DOCK2Q92608 1830 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 GPR75-ASB3A0A0A6YYF3 556 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 ATP5JP18859 108 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 ARMC9Q7Z3E5 817 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 ZNF384Q8TF68 577 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 GPATCH3Q96I76 525 aa25.22■■□□□ 1.63
CLN3-240ENST00000631023 NOL10Q9BSC4 688 aaKnown RBP25.22■■□□□ 1.63
CLN3-240ENST00000631023 PIH1D3Q9NQM4 214 aaKnown RBP25.22■■□□□ 1.63
CLN3-240ENST00000631023 BTDP43251 543 aa25.21■■□□□ 1.63
CLN3-240ENST00000631023 NBPF12Q5TAG4 269 aaPredicted RBP25.21■■□□□ 1.63
CLN3-240ENST00000631023 JMYQ8N9B5 988 aa25.21■■□□□ 1.63
CLN3-240ENST00000631023 CAPNS2Q96L46 248 aa25.21■■□□□ 1.63
CLN3-240ENST00000631023 NDUFB9Q9Y6M9 179 aa25.21■■□□□ 1.63
CLN3-240ENST00000631023 IDH1O75874 414 aaKnown RBP25.2■■□□□ 1.62
CLN3-240ENST00000631023 MAP4K4O95819 1239 aaPredicted RBP25.2■■□□□ 1.62
CLN3-240ENST00000631023 MAP3K12Q12852 859 aa25.2■■□□□ 1.62
CLN3-240ENST00000631023 CYP4F22Q6NT55 531 aa25.2■■□□□ 1.62
CLN3-240ENST00000631023 TMED8Q6PL24 325 aaPredicted RBP25.2■■□□□ 1.62
CLN3-240ENST00000631023 DNAJC2Q99543 621 aaKnown RBP25.2■■□□□ 1.62
CLN3-240ENST00000631023 TMEM39BQ9GZU3 492 aa25.2■■□□□ 1.62
CLN3-240ENST00000631023 WDR33Q9C0J8 1336 aaKnown RBP25.2■■□□□ 1.62
CLN3-240ENST00000631023 IRX6P78412 446 aaPredicted RBP25.19■■□□□ 1.62
CLN3-240ENST00000631023 GRM1Q13255 1194 aa25.19■■□□□ 1.62
CLN3-240ENST00000631023 RGMBQ6NW40 437 aa25.19■■□□□ 1.62
CLN3-240ENST00000631023 ECHDC1Q9NTX5 307 aa25.19■■□□□ 1.62
CLN3-240ENST00000631023 PCNTO95613 3336 aa25.19■■□□□ 1.62
CLN3-240ENST00000631023 BAG3O95817 575 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 PRKG1Q13976 671 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 ANKRD45Q5TZF3 282 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 FAM151AQ8WW52 585 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 HOOK2Q96ED9 719 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 TEPSINQ96N21 525 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 BOLA2Q9H3K6 86 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 ANTXR1Q9H6X2 564 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 UBE2Q2LH0YL09 131 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 ZNF157P51786 506 aaPredicted RBP25.18■■□□□ 1.62
CLN3-240ENST00000631023 CCDC102AQ96A19 550 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 IDI2Q9BXS1 227 aa25.18■■□□□ 1.62
CLN3-240ENST00000631023 ANGEL1Q9UNK9 670 aaKnown RBP25.18■■□□□ 1.62
CLN3-240ENST00000631023 MYH7P12883 1935 aa25.17■■□□□ 1.62
CLN3-240ENST00000631023 GOLIM4O00461 696 aa25.17■■□□□ 1.62
CLN3-240ENST00000631023 TCP10Q12799 353 aa25.17■■□□□ 1.62
CLN3-240ENST00000631023 MOB2Q70IA6 237 aa25.17■■□□□ 1.62
CLN3-240ENST00000631023 HAUS7Q99871 368 aa25.17■■□□□ 1.62
CLN3-240ENST00000631023 PLCG2P16885 1265 aa25.16■■□□□ 1.62
CLN3-240ENST00000631023 PAG1Q9NWQ8 432 aa25.16■■□□□ 1.62
CLN3-240ENST00000631023 RPAP1Q9BWH6 1393 aaPredicted RBP25.15■■□□□ 1.62
CLN3-240ENST00000631023 ENTPD3O75355 529 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 CYP7A1P22680 504 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 IREB2P48200 963 aaKnown RBP25.15■■□□□ 1.62
CLN3-240ENST00000631023 NFIAQ12857 509 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 MAP3K11Q16584 847 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 MAGEB6Q8N7X4 407 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 SSC5DA1L4H1 1573 aa25.15■■□□□ 1.62
CLN3-240ENST00000631023 RHBDL3P58872 404 aa25.14■■□□□ 1.62
CLN3-240ENST00000631023 FAM198AQ9UFP1 575 aa25.14■■□□□ 1.62
CLN3-240ENST00000631023 CDK5RAP2Q96SN8 1893 aa25.14■■□□□ 1.62
CLN3-240ENST00000631023 UNCXA6NJT0 531 aa25.14■■□□□ 1.61
CLN3-240ENST00000631023 MAP2K2P36507 400 aa25.14■■□□□ 1.61
CLN3-240ENST00000631023 RGS3P49796 1198 aa25.14■■□□□ 1.61
CLN3-240ENST00000631023 PPP4CP60510 307 aa25.14■■□□□ 1.61
CLN3-240ENST00000631023 NOGQ13253 232 aa25.14■■□□□ 1.61
CLN3-240ENST00000631023 AATFQ9NY61 560 aaKnown RBP eCLIP25.14■■□□□ 1.61
CLN3-240ENST00000631023 TTC41PQ6P2S7 1318 aa25.13■■□□□ 1.61
CLN3-240ENST00000631023 USP2O75604 605 aaPredicted RBP25.13■■□□□ 1.61
CLN3-240ENST00000631023 NPM3O75607 178 aaKnown RBP25.13■■□□□ 1.61
CLN3-240ENST00000631023 WDHD1O75717 1129 aaPredicted RBP25.13■■□□□ 1.61
CLN3-240ENST00000631023 LDLRAD1Q5T700 205 aa25.13■■□□□ 1.61
CLN3-240ENST00000631023 CERS3Q8IU89 383 aa25.13■■□□□ 1.61
CLN3-240ENST00000631023 CDAN1Q8IWY9 1227 aa25.13■■□□□ 1.61
CLN3-240ENST00000631023 SMC5Q8IY18 1101 aa25.13■■□□□ 1.61
CLN3-240ENST00000631023 ERC2O15083 957 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 IGHDP01880 384 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 SLC9C2Q5TAH2 1124 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 DCAF15Q66K64 600 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 TEX11Q8IYF3 940 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 FZD1Q9UP38 647 aa25.12■■□□□ 1.61
CLN3-240ENST00000631023 PICALMQ13492 652 aa25.11■■□□□ 1.61
CLN3-240ENST00000631023 ADGRA1Q86SQ6 560 aa25.11■■□□□ 1.61
CLN3-240ENST00000631023 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.11■■□□□ 1.612e-6■■■■■ 40.7
CLN3-240ENST00000631023 FOCADQ5VW36 1801 aa25.11■■□□□ 1.61
CLN3-240ENST00000631023 ZSCAN29Q8IWY8 852 aaPredicted RBP25.1■■□□□ 1.61
CLN3-240ENST00000631023 EDC3Q96F86 508 aaKnown RBP25.1■■□□□ 1.61
CLN3-240ENST00000631023 RFX7Q2KHR2 1363 aa25.1■■□□□ 1.61
CLN3-240ENST00000631023 FAM155AB1AL88 458 aaPredicted RBP25.1■■□□□ 1.61
CLN3-240ENST00000631023 AOC2O75106 756 aa25.1■■□□□ 1.61
CLN3-240ENST00000631023 MX1P20591 662 aa25.1■■□□□ 1.61
CLN3-240ENST00000631023 MAP2K1Q02750 393 aaPredicted RBP25.1■■□□□ 1.61
CLN3-240ENST00000631023 ANKRD13AQ8IZ07 590 aa25.1■■□□□ 1.61
CLN3-240ENST00000631023 SH3RF3Q8TEJ3 882 aaPredicted RBP25.1■■□□□ 1.61
CLN3-240ENST00000631023 SLC10A4Q96EP9 437 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms