RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 LILRB3O75022 631 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 IGKV5-2P06315 115 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 BMP1P13497 986 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 VARSP26640 1264 aaKnown RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 LMOD1P29536 600 aaPredicted RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 CTHP32929 405 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 AOC3Q16853 763 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 CWF19L2Q2TBE0 894 aaKnown RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 LINS1Q8NG48 757 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 CELF1Q92879 486 aaKnown RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 CCDC85AQ96PX6 553 aaPredicted RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 SENP2Q9HC62 589 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 NSFL1CQ9UNZ2 370 aaKnown RBP8.11□□□□□ -1.11
TCF4-249ENST00000625716 GJA3Q9Y6H8 435 aa8.11□□□□□ -1.11
TCF4-249ENST00000625716 ZNF521Q96K83 1311 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 TIAM2Q8IVF5 1701 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 CAPN5O15484 640 aaPredicted RBP8.1□□□□□ -1.11
TCF4-249ENST00000625716 GCKRQ14397 625 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 SLC4A10Q6U841 1118 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 UBE3BQ7Z3V4 1068 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 ANKRD18AQ8IVF6 992 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 GPC2Q8N158 579 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 FOXJ1Q92949 421 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 CDC5LQ99459 802 aaKnown RBP8.1□□□□□ -1.11
TCF4-249ENST00000625716 EYA3Q99504 573 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 RTFDC1Q9BY42 306 aaPredicted RBP8.1□□□□□ -1.11
TCF4-249ENST00000625716 SEC31BQ9NQW1 1179 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 ANKIB1Q9P2G1 1089 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 HACL1Q9UJ83 578 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 WASF2Q9Y6W5 498 aa8.1□□□□□ -1.11
TCF4-249ENST00000625716 ZNF541Q9H0D2 1346 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 F6X3S4 739 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 H7C1W4 665 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 CTSWP56202 376 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 SLFN5Q08AF3 891 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 KIAA2012Q0VF49 1180 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 TNIP1Q15025 636 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 WASHC4Q2M389 1173 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 TUSC1Q2TAM9 212 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 EAPPQ56P03 285 aaPredicted RBP8.09□□□□□ -1.11
TCF4-249ENST00000625716 C4orf48Q5BLP8 95 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 PNMA8AQ86V59 439 aaPredicted RBP8.09□□□□□ -1.11
TCF4-249ENST00000625716 KLF16Q9BXK1 252 aaPredicted RBP8.09□□□□□ -1.11
TCF4-249ENST00000625716 C9orf78Q9NZ63 289 aaPredicted RBP8.09□□□□□ -1.11
TCF4-249ENST00000625716 ZNRF3Q9ULT6 936 aa8.09□□□□□ -1.11
TCF4-249ENST00000625716 CCDC88AQ3V6T2 1871 aa8.09□□□□□ -1.12
TCF4-249ENST00000625716 TERTO14746 1132 aaKnown RBP8.08□□□□□ -1.12
TCF4-249ENST00000625716 EPHX2P34913 555 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 IGHMBP2P38935 993 aaKnown RBP8.08□□□□□ -1.12
TCF4-249ENST00000625716 GPSM2P81274 684 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 CIAPIN1Q6FI81 312 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 SLC51AQ86UW1 340 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 TTLL11Q8NHH1 800 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 KIFC2Q96AC6 838 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 BCL2L13Q9BXK5 485 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 ZC3H12CQ9C0D7 883 aaKnown RBP8.08□□□□□ -1.12
TCF4-249ENST00000625716 SRCIN1Q9C0H9 1055 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 GGA1Q9UJY5 639 aa8.08□□□□□ -1.12
TCF4-249ENST00000625716 WDR90Q96KV7 1748 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 SNED1Q8TER0 1413 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 ALDH1L1O75891 902 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 UFL1O94874 794 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 CT47B1P0C2W7 299 aaPredicted RBP8.07□□□□□ -1.12
TCF4-249ENST00000625716 NNTQ13423 1086 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 ALDH1L2Q3SY69 923 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 BEND3Q5T5X7 828 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 LDHDQ86WU2 507 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 MPHOSPH8Q99549 860 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 TAF1DQ9H5J8 278 aaPredicted RBP8.07□□□□□ -1.12
TCF4-249ENST00000625716 GREM2Q9H772 168 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 BSDC1Q9NW68 430 aaPredicted RBP8.07□□□□□ -1.12
TCF4-249ENST00000625716 POLLQ9UGP5 575 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 CHMP3Q9Y3E7 222 aa8.07□□□□□ -1.12
TCF4-249ENST00000625716 DICER1Q9UPY3 1922 aaKnown RBP8.07□□□□□ -1.12
TCF4-249ENST00000625716 DDX60Q8IY21 1712 aaKnown RBP8.06□□□□□ -1.12
TCF4-249ENST00000625716 PTPRCP08575 1304 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 XDHP47989 1333 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 ANKRD18BA2A2Z9 1011 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 GRM8O00222 908 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 RAD17O75943 681 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 ITGA6P23229 1130 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 ATP2B4P23634 1241 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 CXCL9Q07325 125 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 IFIT5Q13325 482 aaKnown RBP8.06□□□□□ -1.12
TCF4-249ENST00000625716 TAF7LQ5H9L4 462 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 TBC1D16Q8TBP0 767 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 SSH1Q8WYL5 1049 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 CDK15Q96Q40 435 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 PLA2G12BQ9BX93 195 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 DBNDD1Q9H9R9 158 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 SMC4Q9NTJ3 1288 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 PODXL2Q9NZ53 605 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 LAMB2P55268 1798 aa8.06□□□□□ -1.12
TCF4-249ENST00000625716 H7C1D1 291 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 WIPF1O43516 503 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 ECE2O60344 883 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 CSF1RP07333 972 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 EPS15P42566 896 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 KCNJ4P48050 445 aa8.05□□□□□ -1.12
TCF4-249ENST00000625716 HNRNPUQ00839 825 aaKnown RBP eCLIP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms