RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ABCF2Q9UG63 623 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 KIF1BO60333 1816 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 SMIM23A6NLE4 172 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 ZNF853P0CG23 659 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 ARID4AP29374 1257 aaPredicted RBP9.99□□□□□ -0.81
VCL-206ENST00000623461 RILPL1Q5EBL4 403 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 SRGAP1Q7Z6B7 1085 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 TESK2Q96S53 571 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 KIF1CO43896 1103 aaKnown RBP9.99□□□□□ -0.81
VCL-206ENST00000623461 MRVI1Q9Y6F6 885 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 RTL9Q8NET4 1388 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 KAT14Q9H8E8 782 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 FAM83GA6ND36 823 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 HELLSQ9NRZ9 838 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 HIP1RO75146 1068 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 ATP2A2P16615 1042 aaKnown RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 GNAQP50148 359 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 VSIG1Q86XK7 387 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 FERMT1Q9BQL6 677 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 HDAC9Q9UKV0 1011 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 CTNND2Q9UQB3 1225 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 RGS12O14924 1447 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 RBM6P78332 1123 aaKnown RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 EHMT1Q9H9B1 1298 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 CCT6AP40227 531 aaKnown RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 MMS22LQ6ZRQ5 1243 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 TBC1D31Q96DN5 1066 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 LRRD1A4D1F6 860 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 PDE4BQ07343 736 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 ZKSCAN8Q15776 578 aaPredicted RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 FAM204AQ9H8W3 233 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 LARSQ9P2J5 1176 aaKnown RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 CCDC151A5D8V7 595 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 PPP1R7Q15435 360 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 SEL1L2Q5TEA6 688 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 FAM184BQ9ULE4 1060 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 CCT5P48643 541 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 TBC1D8BQ0IIM8 1120 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 LONRF2Q1L5Z9 754 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 GKAP1Q5VSY0 366 aaPredicted RBP9.98□□□□□ -0.81
VCL-206ENST00000623461 ESR2Q92731 530 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 ZBTB9Q96C00 473 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 ODF2LQ9ULJ1 636 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 MSH6P52701 1360 aa9.98□□□□□ -0.81
VCL-206ENST00000623461 ADALQ6DHV7 355 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 CDC37L1Q7L3B6 337 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 ACTR5Q9H9F9 607 aaPredicted RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 CWC25Q9NXE8 425 aaPredicted RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 STX10O60499 249 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 SPTY2D1Q68D10 685 aaPredicted RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 CEP120Q8N960 986 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 ESCO1Q5FWF5 840 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 MYO1AQ9UBC5 1043 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 NFE2L3Q9Y4A8 694 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 ERMNQ8TAM6 284 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 CUL5Q93034 780 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 NOC4LQ9BVI4 516 aaKnown RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 RABEP2Q9H5N1 569 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 CDC23Q9UJX2 597 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 MORC2Q9Y6X9 1032 aaPredicted RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 RNF113AO15541 343 aaKnown RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 TBCAO75347 108 aaKnown RBP9.97□□□□□ -0.81
VCL-206ENST00000623461 MCUR1Q96AQ8 359 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 VPS16Q9H269 839 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 PAG1Q9NWQ8 432 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 STARD3NLO95772 234 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 KRT9P35527 623 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 PAK1Q13153 545 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 TRIM58Q8NG06 486 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 TRIM4Q9C037 500 aa9.97□□□□□ -0.81
VCL-206ENST00000623461 MYO1CO00159 1063 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 GRM8O00222 908 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 GSTA5Q7RTV2 222 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 CERS3Q8IU89 383 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 TACO1Q9BSH4 297 aaKnown RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 PARP2Q9UGN5 583 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 ERCC3P19447 782 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 ZC3H6P61129 1189 aaKnown RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 IRX4P78413 519 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 USP37Q86T82 979 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 PPANQ9NQ55 473 aaKnown RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 RNF40O75150 1001 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 MUM1Q2TAK8 710 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 IFIT1BQ5T764 474 aaKnown RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 CCDC62Q6P9F0 684 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 CASQ2O14958 399 aaPredicted RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 CLCN6P51797 869 aa9.96□□□□□ -0.81
VCL-206ENST00000623461 ARHGEF2Q92974 986 aaKnown RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 SUDS3Q9H7L9 328 aaPredicted RBP9.96□□□□□ -0.81
VCL-206ENST00000623461 NOS1P29475 1434 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 ARMC9Q7Z3E5 817 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 CCDC25Q86WR0 208 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 SYCP3Q8IZU3 236 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 FERMT2Q96AC1 680 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 NUCKS1Q9H1E3 243 aaKnown RBP9.96□□□□□ -0.82
VCL-206ENST00000623461 FAM135BQ49AJ0 1406 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 POSTNQ15063 836 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 PHLDB3Q6NSJ2 640 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms