RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PI16Q6UXB8 463 aa19.66■□□□□ 0.74
BRCA1-228ENST00000618469 ZGPATQ8N5A5 531 aaKnown RBP19.66■□□□□ 0.74
BRCA1-228ENST00000618469 ZDHHC15Q96MV8 337 aa19.66■□□□□ 0.74
BRCA1-228ENST00000618469 DBNDD2Q9BQY9 259 aa19.66■□□□□ 0.74
BRCA1-228ENST00000618469 TRIM17Q9Y577 477 aa19.66■□□□□ 0.74
BRCA1-228ENST00000618469 MYH2Q9UKX2 1941 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 ARID4AP29374 1257 aaPredicted RBP19.65■□□□□ 0.74
BRCA1-228ENST00000618469 RRP1P56182 461 aaKnown RBP19.65■□□□□ 0.74
BRCA1-228ENST00000618469 SREBF2Q12772 1141 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 RASA3Q14644 834 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 ERC1Q8IUD2 1116 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 RPAP2Q8IXW5 612 aaPredicted RBP19.65■□□□□ 0.74
BRCA1-228ENST00000618469 TMOD2Q9NZR1 351 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 ABCF2Q9UG63 623 aa19.65■□□□□ 0.74
BRCA1-228ENST00000618469 ANGEL1Q9UNK9 670 aaKnown RBP19.65■□□□□ 0.74
BRCA1-228ENST00000618469 TCP10L2B9ZVM9 353 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 CACNB3P54284 484 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 TTC39AQ5SRH9 613 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 HHIPL2Q6UWX4 724 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 DZIP1Q86YF9 867 aaKnown RBP19.64■□□□□ 0.73
BRCA1-228ENST00000618469 HMG20BQ9P0W2 317 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 DAGLAQ9Y4D2 1042 aa19.64■□□□□ 0.73
BRCA1-228ENST00000618469 OTOFQ9HC10 1997 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 UQCRFS1P1P0C7P4 283 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 MCAMP43121 646 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 HSP90AB4PQ58FF6 505 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 SPRYD7Q5W111 196 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 APOBEC3HQ6NTF7 200 aaKnown RBP19.63■□□□□ 0.73
BRCA1-228ENST00000618469 ARMC9Q7Z3E5 817 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 SIRT2Q8IXJ6 389 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 SPATA5Q8NB90 893 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 MRIQ9BWK5 157 aa19.63■□□□□ 0.73
BRCA1-228ENST00000618469 TLR7Q9NYK1 1049 aaKnown RBP19.63■□□□□ 0.73
BRCA1-228ENST00000618469 DBNLQ9UJU6 430 aaKnown RBP19.63■□□□□ 0.73
BRCA1-228ENST00000618469 APBB1O00213 710 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 TNNI2P48788 182 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 CCDC158Q5M9N0 1113 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 OTOP1Q7RTM1 612 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 GCC1Q96CN9 775 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 CLMNQ96JQ2 1002 aa19.62■□□□□ 0.73
BRCA1-228ENST00000618469 NOM1Q5C9Z4 860 aaKnown RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 NBPF12Q5TAG4 269 aaPredicted RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 SPTY2D1Q68D10 685 aaPredicted RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 EAF2Q96CJ1 260 aaPredicted RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 TMEM39BQ9GZU3 492 aa19.61■□□□□ 0.73
BRCA1-228ENST00000618469 CCDC8Q9H0W5 538 aaPredicted RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 IL1RAPL2Q9NP60 686 aa19.61■□□□□ 0.73
BRCA1-228ENST00000618469 CENPFP49454 3210 aa19.61■□□□□ 0.73
BRCA1-228ENST00000618469 KIAA0100Q14667 2235 aaKnown RBP19.61■□□□□ 0.73
BRCA1-228ENST00000618469 HTTP42858 3142 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 EN2P19622 333 aaPredicted RBP19.6■□□□□ 0.73
BRCA1-228ENST00000618469 SUPT20HL1Q3ZLR7 823 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 AACSQ86V21 672 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 IFNL1Q8IU54 200 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 CDAN1Q8IWY9 1227 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 RHPN1Q8TCX5 695 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 CD99L2Q8TCZ2 262 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 SLC10A4Q96EP9 437 aa19.6■□□□□ 0.73
BRCA1-228ENST00000618469 IGF2BP3O00425 579 aaKnown RBP eCLIP19.59■□□□□ 0.73
BRCA1-228ENST00000618469 LDLRAD1Q5T700 205 aa19.59■□□□□ 0.73
BRCA1-228ENST00000618469 TBC1D9Q6ZT07 1266 aa19.59■□□□□ 0.73
BRCA1-228ENST00000618469 SNRKQ9NRH2 765 aa19.59■□□□□ 0.73
BRCA1-228ENST00000618469 RPAP1Q9BWH6 1393 aaPredicted RBP19.58■□□□□ 0.73
BRCA1-228ENST00000618469 GAKO14976 1311 aa19.58■□□□□ 0.73
BRCA1-228ENST00000618469 PPP1R12BO60237 982 aaPredicted RBP19.58■□□□□ 0.72
BRCA1-228ENST00000618469 CAP1Q01518 475 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 MECOMQ03112 1051 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 CDC42EP5Q6NZY7 148 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 SLF2Q8IX21 1173 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 KIF1BPQ96EK5 621 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 TEPSINQ96N21 525 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 BCL11AQ9H165 835 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 RAI14Q9P0K7 980 aa19.58■□□□□ 0.72
BRCA1-228ENST00000618469 MYO5AQ9Y4I1 1855 aaKnown RBP19.58■□□□□ 0.72
BRCA1-228ENST00000618469 MROH7-TTC4A0A0A0MT08 1334 aa19.57■□□□□ 0.72
BRCA1-228ENST00000618469 FKBP1CQ5VVH2 108 aa19.57■□□□□ 0.72
BRCA1-228ENST00000618469 CFHR5Q9BXR6 569 aa19.57■□□□□ 0.72
BRCA1-228ENST00000618469 DOCK2Q92608 1830 aa19.57■□□□□ 0.72
BRCA1-228ENST00000618469 FAM83AQ86UY5 434 aa19.56■□□□□ 0.72
BRCA1-228ENST00000618469 CLASRPQ8N2M8 674 aaKnown RBP19.56■□□□□ 0.72
BRCA1-228ENST00000618469 WNK4Q96J92 1243 aa19.56■□□□□ 0.72
BRCA1-228ENST00000618469 ZNF512BQ96KM6 892 aaPredicted RBP19.56■□□□□ 0.72
BRCA1-228ENST00000618469 USP40Q9NVE5 1235 aa19.56■□□□□ 0.72
BRCA1-228ENST00000618469 LRP2BPQ9P2M1 347 aa19.56■□□□□ 0.72
BRCA1-228ENST00000618469 RFX7Q2KHR2 1363 aa19.56■□□□□ 0.72
BRCA1-228ENST00000618469 MANSC4A6NHS7 340 aaPredicted RBP19.55■□□□□ 0.72
BRCA1-228ENST00000618469 RAB11FIP3O75154 756 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 ALDH1A1P00352 501 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 MYCP01106 439 aaPredicted RBP19.55■□□□□ 0.72
BRCA1-228ENST00000618469 BTDP43251 543 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 IREB2P48200 963 aaKnown RBP19.55■□□□□ 0.72
BRCA1-228ENST00000618469 NFIAQ12857 509 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 MAP3K11Q16584 847 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 ZNF384Q8TF68 577 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 NSUN4Q96CB9 384 aaKnown RBP19.55■□□□□ 0.72
BRCA1-228ENST00000618469 PTPN22Q9Y2R2 807 aa19.55■□□□□ 0.72
BRCA1-228ENST00000618469 GJA5P36382 358 aa19.54■□□□□ 0.72
BRCA1-228ENST00000618469 ZAP70P43403 619 aa19.54■□□□□ 0.72
BRCA1-228ENST00000618469 FXR1P51114 621 aaKnown RBP eCLIP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms