RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ZNF333Q96JL9 665 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 PUS3Q9BZE2 481 aaKnown RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 CPA4Q9UI42 421 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 PSME4Q14997 1843 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 IL16Q14005 1332 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 SPDYE5A6NIY4 337 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 BTBD19C9JJ37 291 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 ALDH1L1O75891 902 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 NEFLP07196 543 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 PSMC4P43686 418 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 CASP7P55210 303 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 UBXN2AP68543 259 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 LACTBP83111 547 aaPredicted RBP6.49□□□□□ -1.37
VRK3-226ENST00000602029 CCDC27Q2M243 656 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 CCDC184Q52MB2 194 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 TDRD7Q8NHU6 1098 aaKnown RBP6.49□□□□□ -1.37
VRK3-226ENST00000602029 SUCLG2Q96I99 432 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 FAM84BQ96KN1 310 aaPredicted RBP6.49□□□□□ -1.37
VRK3-226ENST00000602029 ZNF341Q9BYN7 854 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 ARHGAP39Q9C0H5 1083 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 RNF208Q9H0X6 261 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 PICK1Q9NRD5 415 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 FAM205AQ6ZU69 1335 aa6.49□□□□□ -1.37
VRK3-226ENST00000602029 PDHXO00330 501 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 IRF6O14896 467 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 TLR2O60603 784 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 VAMP4O75379 141 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 SLC5A1P13866 664 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 BCAMP50895 628 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 PPIL2Q13356 520 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 LRRC24Q50LG9 513 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 GADL1Q6ZQY3 521 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 Q7L0L9 218 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.48□□□□□ -1.37
VRK3-226ENST00000602029 NKX2-3Q8TAU0 364 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 SMCR8Q8TEV9 937 aaPredicted RBP6.48□□□□□ -1.37
VRK3-226ENST00000602029 MS4A4AQ96JQ5 239 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 TRIM47Q96LD4 638 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 PARK7Q99497 189 aaKnown RBP6.48□□□□□ -1.37
VRK3-226ENST00000602029 HTATIP2Q9BUP3 242 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 SIL1Q9H173 461 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 BICC1Q9H694 974 aaKnown RBP6.48□□□□□ -1.37
VRK3-226ENST00000602029 GNL3LQ9NVN8 582 aaKnown RBP6.48□□□□□ -1.37
VRK3-226ENST00000602029 NR2E3Q9Y5X4 410 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 SNCAIPQ9Y6H5 919 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 ZNF646O15015 1829 aaPredicted RBP6.48□□□□□ -1.37
VRK3-226ENST00000602029 MYPNQ86TC9 1320 aa6.48□□□□□ -1.37
VRK3-226ENST00000602029 MYH3P11055 1940 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 TESPA1A2RU30 521 aaPredicted RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 GNRH1P01148 92 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 TFRCP02786 760 aaKnown RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 LDHBP07195 334 aaKnown RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 NBPF7P0C2Y1 421 aaPredicted RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 INPP5BP32019 993 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 GRK4P32298 578 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 PRMT2P55345 433 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 FCGRTP55899 365 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 MTFR1Q15390 333 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 PUM3Q15397 648 aaKnown RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 GRIK5Q16478 980 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 WDR63Q8IWG1 891 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 KLHDC4Q8TBB5 520 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 TEPSINQ96N21 525 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 PRDM6Q9NQX0 595 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 USP40Q9NVE5 1235 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 RIPOR2Q9Y4F9 1068 aa6.47□□□□□ -1.37
VRK3-226ENST00000602029 LRRFIP2Q9Y608 721 aaKnown RBP6.47□□□□□ -1.37
VRK3-226ENST00000602029 TNPO2O14787 897 aaKnown RBP6.46□□□□□ -1.38
VRK3-226ENST00000602029 EVI5O60447 810 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 FARP2O94887 1054 aaPredicted RBP6.46□□□□□ -1.38
VRK3-226ENST00000602029 PDE8BO95263 885 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 CYP2C8P10632 490 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 CCL5P13501 91 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 COL9A1P20849 921 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 HDLBPQ00341 1268 aaKnown RBP6.46□□□□□ -1.38
VRK3-226ENST00000602029 PPATQ06203 517 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 PICALMQ13492 652 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 DIXDC1Q155Q3 683 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 ANKRD23Q86SG2 305 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 DZIP1Q86YF9 867 aaKnown RBP6.46□□□□□ -1.38
VRK3-226ENST00000602029 WDR66Q8TBY9 1149 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 ZDHHC15Q96MV8 337 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 CWC22Q9HCG8 908 aaKnown RBP6.46□□□□□ -1.38
VRK3-226ENST00000602029 SRRDQ9UH36 339 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 IRS2Q9Y4H2 1338 aa6.46□□□□□ -1.38
VRK3-226ENST00000602029 TRIM75PA6NK02 468 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 OSBPP22059 807 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 PRKCZQ05513 592 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 ATP2B3Q16720 1220 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 GORABQ5T7V8 394 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 FASTKD5Q7L8L6 764 aaKnown RBP6.45□□□□□ -1.38
VRK3-226ENST00000602029 FBXO33Q7Z6M2 555 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 FAM83AQ86UY5 434 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 CCAR1Q8IX12 1150 aaKnown RBP6.45□□□□□ -1.38
VRK3-226ENST00000602029 LPIN2Q92539 896 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 SHISA4Q96DD7 197 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 ZCCHC17Q9NP64 241 aaKnown RBP6.45□□□□□ -1.38
VRK3-226ENST00000602029 CEP126Q9P2H0 1117 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 ABCF2Q9UG63 623 aa6.45□□□□□ -1.38
VRK3-226ENST00000602029 ZHX2Q9Y6X8 837 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms