RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CFAP100Q494V2 611 aa22.14■■□□□ 1.13
LIG1-216ENST00000598938 ERICH6Q7L0X2 663 aa22.14■■□□□ 1.13
LIG1-216ENST00000598938 HAUS7Q99871 368 aa22.14■■□□□ 1.13
LIG1-216ENST00000598938 BOLA2Q9H3K6 86 aa22.14■■□□□ 1.13
LIG1-216ENST00000598938 PIH1D3Q9NQM4 214 aaKnown RBP22.14■■□□□ 1.13
LIG1-216ENST00000598938 STAP2Q9UGK3 403 aa22.14■■□□□ 1.13
LIG1-216ENST00000598938 IGSF3O75054 1194 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 SLC10A3P09131 477 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 CRKP46108 304 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 ZNF157P51786 506 aaPredicted RBP22.13■■□□□ 1.13
LIG1-216ENST00000598938 KIF23Q02241 960 aaPredicted RBP22.13■■□□□ 1.13
LIG1-216ENST00000598938 DLGAP5Q15398 846 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 TSHZ3Q63HK5 1081 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 SULF1Q8IWU6 871 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 PCDHAC2Q9Y5I4 1007 aa22.13■■□□□ 1.13
LIG1-216ENST00000598938 PAPPA2Q9BXP8 1791 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 SPDYE2BA6NHP3 402 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 ADM5C9JUS6 153 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 WNT10BO00744 389 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 SPDYE6P0CI01 402 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 NBPF9Q3BBW0 867 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 HHIPL2Q6UWX4 724 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 CENPQQ7L2Z9 268 aaPredicted RBP22.12■■□□□ 1.13
LIG1-216ENST00000598938 PI4K2BQ8TCG2 481 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 TEKT1Q969V4 418 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 CCDC136Q96JN2 1154 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 DNAJC2Q99543 621 aaKnown RBP22.12■■□□□ 1.13
LIG1-216ENST00000598938 ANTXR1Q9H6X2 564 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 LRP2BPQ9P2M1 347 aa22.12■■□□□ 1.13
LIG1-216ENST00000598938 DOCK2Q92608 1830 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 PDE1AP54750 535 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 MECOMQ03112 1051 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 TTF1Q15361 905 aaPredicted RBP22.11■■□□□ 1.13
LIG1-216ENST00000598938 DIXDC1Q155Q3 683 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 DZIP1Q86YF9 867 aaKnown RBP22.11■■□□□ 1.13
LIG1-216ENST00000598938 ZNF384Q8TF68 577 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 NSUN4Q96CB9 384 aaKnown RBP22.11■■□□□ 1.13
LIG1-216ENST00000598938 RNF186Q9NXI6 227 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 GGA3Q9NZ52 723 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 MAST2Q6P0Q8 1798 aa22.11■■□□□ 1.13
LIG1-216ENST00000598938 GOLIM4O00461 696 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 ERC2O15083 957 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 GLRX3O76003 335 aaKnown RBP22.1■■□□□ 1.13
LIG1-216ENST00000598938 RBM5P52756 815 aaKnown RBP eCLIP22.1■■□□□ 1.13
LIG1-216ENST00000598938 FKBP1BP68106 108 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 DLK2Q6UY11 383 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 ZDHHC15Q96MV8 337 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 PAG1Q9NWQ8 432 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 RAI14Q9P0K7 980 aa22.1■■□□□ 1.13
LIG1-216ENST00000598938 ASTN2O75129 1339 aaPredicted RBP22.09■■□□□ 1.13
LIG1-216ENST00000598938 EDC3Q96F86 508 aaKnown RBP22.09■■□□□ 1.13
LIG1-216ENST00000598938 FAM163AQ96GL9 167 aaPredicted RBP22.09■■□□□ 1.13
LIG1-216ENST00000598938 PRMT6Q96LA8 375 aaPredicted RBP22.09■■□□□ 1.13
LIG1-216ENST00000598938 PPP4R2Q9NY27 417 aa22.09■■□□□ 1.13
LIG1-216ENST00000598938 GAKO14976 1311 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 AOX1Q06278 1338 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 TRPA1O75762 1119 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 PDE4AP27815 886 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 APOBEC3HQ6NTF7 200 aaKnown RBP22.08■■□□□ 1.13
LIG1-216ENST00000598938 PLEKHM2Q8IWE5 1019 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 SLF2Q8IX21 1173 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 DAGLAQ9Y4D2 1042 aa22.08■■□□□ 1.13
LIG1-216ENST00000598938 PITPNM2Q9BZ72 1349 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 MYO5AQ9Y4I1 1855 aaKnown RBP22.07■■□□□ 1.12
LIG1-216ENST00000598938 IDH1O75874 414 aaKnown RBP22.07■■□□□ 1.12
LIG1-216ENST00000598938 GSTO1P78417 241 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 ANGEL2Q5VTE6 544 aaKnown RBP22.07■■□□□ 1.12
LIG1-216ENST00000598938 CTU1Q7Z7A3 348 aaKnown RBP22.07■■□□□ 1.12
LIG1-216ENST00000598938 CDCA5Q96FF9 252 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 CSRNP1Q96S65 589 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 OSBPL3Q9H4L5 887 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 ECM29Q5VYK3 1845 aa22.07■■□□□ 1.12
LIG1-216ENST00000598938 MROH7-TTC4A0A0A0MT08 1334 aa22.06■■□□□ 1.12
LIG1-216ENST00000598938 MAP3K12Q12852 859 aa22.06■■□□□ 1.12
LIG1-216ENST00000598938 TMED8Q6PL24 325 aaPredicted RBP22.06■■□□□ 1.12
LIG1-216ENST00000598938 MYH2Q9UKX2 1941 aa22.06■■□□□ 1.12
LIG1-216ENST00000598938 MYO1BO43795 1136 aa22.05■■□□□ 1.12
LIG1-216ENST00000598938 LDHCP07864 332 aa22.05■■□□□ 1.12
LIG1-216ENST00000598938 NAA16Q6N069 864 aaPredicted RBP22.05■■□□□ 1.12
LIG1-216ENST00000598938 RASAL3Q86YV0 1011 aa22.05■■□□□ 1.12
LIG1-216ENST00000598938 PKN2Q16513 984 aaKnown RBP22.04■■□□□ 1.12
LIG1-216ENST00000598938 SPDYE2Q495Y8 402 aa22.04■■□□□ 1.12
LIG1-216ENST00000598938 TDRD3Q9H7E2 651 aaKnown RBP22.04■■□□□ 1.12
LIG1-216ENST00000598938 ZNF70Q9UC06 446 aaPredicted RBP22.04■■□□□ 1.12
LIG1-216ENST00000598938 GPR75-ASB3A0A0A6YYF3 556 aa22.03■■□□□ 1.12
LIG1-216ENST00000598938 CLRN2A0PK11 232 aa22.03■■□□□ 1.12
LIG1-216ENST00000598938 MAGEB6Q8N7X4 407 aa22.03■■□□□ 1.12
LIG1-216ENST00000598938 MAP4K4O95819 1239 aaPredicted RBP22.02■■□□□ 1.12
LIG1-216ENST00000598938 PDE6AP16499 860 aa22.02■■□□□ 1.12
LIG1-216ENST00000598938 BTDP43251 543 aa22.02■■□□□ 1.12
LIG1-216ENST00000598938 SOX10P56693 466 aa22.02■■□□□ 1.12
LIG1-216ENST00000598938 ADGRA1Q86SQ6 560 aa22.02■■□□□ 1.12
LIG1-216ENST00000598938 APOBEC3FQ8IUX4 373 aaKnown RBP22.02■■□□□ 1.12
LIG1-216ENST00000598938 KBTBD3Q8NAB2 608 aa22.02■■□□□ 1.12
LIG1-216ENST00000598938 CYP7A1P22680 504 aa22.01■■□□□ 1.11
LIG1-216ENST00000598938 SLC9C2Q5TAH2 1124 aa22.01■■□□□ 1.11
LIG1-216ENST00000598938 PRPF38BQ5VTL8 546 aaKnown RBP22.01■■□□□ 1.11
LIG1-216ENST00000598938 CDC42EP5Q6NZY7 148 aa22.01■■□□□ 1.11
LIG1-216ENST00000598938 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.01■■□□□ 1.113e-9■■■□□ 16.2
LIG1-216ENST00000598938 TCRBV5S4A2TA0A5A2 114 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms