RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 DAGLAQ9Y4D2 1042 aa13.53□□□□□ -0.24
LIG1-211ENST00000596457 MAP2K2P36507 400 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 SPDYE2Q495Y8 402 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 APOBEC3HQ6NTF7 200 aaKnown RBP13.52□□□□□ -0.25
LIG1-211ENST00000596457 SLF2Q8IX21 1173 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 C2orf69Q8N8R5 385 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 ZNF512BQ96KM6 892 aaPredicted RBP13.52□□□□□ -0.25
LIG1-211ENST00000596457 MRIQ9BWK5 157 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 DEFB129Q9H1M3 183 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 BOLA2Q9H3K6 86 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 GBA2Q9HCG7 927 aaPredicted RBP13.52□□□□□ -0.25
LIG1-211ENST00000596457 PIH1D3Q9NQM4 214 aaKnown RBP13.52□□□□□ -0.25
LIG1-211ENST00000596457 USP40Q9NVE5 1235 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 WBP1LQ9NX94 342 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 AK9Q5TCS8 1911 aa13.52□□□□□ -0.25
LIG1-211ENST00000596457 ZBTB22O15209 634 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 IDH1O75874 414 aaKnown RBP13.51□□□□□ -0.25
LIG1-211ENST00000596457 IGHDP01880 384 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 LDHCP07864 332 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 NF2P35240 595 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 TNNI2P48788 182 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 GSTO1P78417 241 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 HDAC1Q13547 482 aaPredicted RBP13.51□□□□□ -0.25
LIG1-211ENST00000596457 RASA3Q14644 834 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 SAPCD2Q86UD0 394 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 CAPNS2Q96L46 248 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 ANTXR1Q9H6X2 564 aa13.51□□□□□ -0.25
LIG1-211ENST00000596457 MROH7-TTC4A0A0A0MT08 1334 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 GOLIM4O00461 696 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 HSPA8P11142 646 aaKnown RBP13.5□□□□□ -0.25
LIG1-211ENST00000596457 BTDP43251 543 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 TNFAIP1Q13829 316 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 TSHZ3Q63HK5 1081 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 NAA16Q6N069 864 aaPredicted RBP13.5□□□□□ -0.25
LIG1-211ENST00000596457 CDC42EP5Q6NZY7 148 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 MOB2Q70IA6 237 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 NSUN4Q96CB9 384 aaKnown RBP13.5□□□□□ -0.25
LIG1-211ENST00000596457 GCC1Q96CN9 775 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 NOL10Q9BSC4 688 aaKnown RBP13.5□□□□□ -0.25
LIG1-211ENST00000596457 BEGAINQ9BUH8 593 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 FZD1Q9UP38 647 aa13.5□□□□□ -0.25
LIG1-211ENST00000596457 HUNKP57058 714 aa13.49□□□□□ -0.25
LIG1-211ENST00000596457 TCP10Q12799 353 aa13.49□□□□□ -0.25
LIG1-211ENST00000596457 NBPF12Q5TAG4 269 aaPredicted RBP13.49□□□□□ -0.25
LIG1-211ENST00000596457 EDC3Q96F86 508 aaKnown RBP13.49□□□□□ -0.25
LIG1-211ENST00000596457 GPATCH3Q96I76 525 aa13.49□□□□□ -0.25
LIG1-211ENST00000596457 TMEM39BQ9GZU3 492 aa13.49□□□□□ -0.25
LIG1-211ENST00000596457 MAST2Q6P0Q8 1798 aa13.49□□□□□ -0.25
LIG1-211ENST00000596457 UBE2Q2LH0YL09 131 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 ATP5JP18859 108 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 PICALMQ13492 652 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 CYP4F22Q6NT55 531 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 MAGEB6Q8N7X4 407 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 OTUD7AQ8TE49 926 aaPredicted RBP13.48□□□□□ -0.25
LIG1-211ENST00000596457 ZNF384Q8TF68 577 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 ECHDC1Q9NTX5 307 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 PPP2R3BQ9Y5P8 575 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 DOCK2Q92608 1830 aa13.48□□□□□ -0.25
LIG1-211ENST00000596457 THSD7BQ9C0I4 1608 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 GAKO14976 1311 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 CA12O43570 354 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 MAP4K4O95819 1239 aaPredicted RBP13.47□□□□□ -0.25
LIG1-211ENST00000596457 CYP7A1P22680 504 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 FKBP1BP68106 108 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 MAP3K12Q12852 859 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 TTF1Q15361 905 aaPredicted RBP13.47□□□□□ -0.25
LIG1-211ENST00000596457 SUPT20HL1Q3ZLR7 823 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-211ENST00000596457 FAM163AQ96GL9 167 aaPredicted RBP13.47□□□□□ -0.25
LIG1-211ENST00000596457 PAG1Q9NWQ8 432 aa13.47□□□□□ -0.25
LIG1-211ENST00000596457 AATFQ9NY61 560 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-211ENST00000596457 ANGEL1Q9UNK9 670 aaKnown RBP13.47□□□□□ -0.25
LIG1-211ENST00000596457 GPR75-ASB3A0A0A6YYF3 556 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 NFIAQ12857 509 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 NOGQ13253 232 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 ARMC9Q7Z3E5 817 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 CDAN1Q8IWY9 1227 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 CCDC102AQ96A19 550 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 HAUS7Q99871 368 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 LNPKQ9C0E8 428 aa13.46□□□□□ -0.25
LIG1-211ENST00000596457 PAPPA2Q9BXP8 1791 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 BAG3O95817 575 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 CENPBP07199 599 aaPredicted RBP13.45□□□□□ -0.26
LIG1-211ENST00000596457 RGS3P49796 1198 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 ZNF157P51786 506 aaPredicted RBP13.45□□□□□ -0.26
LIG1-211ENST00000596457 DYNLL1P63167 89 aaKnown RBP13.45□□□□□ -0.26
LIG1-211ENST00000596457 SLC9C2Q5TAH2 1124 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 RGMBQ6NW40 437 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 ADGRA1Q86SQ6 560 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 ZSCAN29Q8IWY8 852 aaPredicted RBP13.45□□□□□ -0.26
LIG1-211ENST00000596457 ZFPM1Q8IX07 1006 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 TEX11Q8IYF3 940 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 MIGA1Q8NAN2 632 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 SH3RF3Q8TEJ3 882 aaPredicted RBP13.45□□□□□ -0.26
LIG1-211ENST00000596457 FAM151AQ8WW52 585 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 FAM198AQ9UFP1 575 aa13.45□□□□□ -0.26
LIG1-211ENST00000596457 PPP1R12BO60237 982 aaPredicted RBP13.44□□□□□ -0.26
LIG1-211ENST00000596457 AOC2O75106 756 aa13.44□□□□□ -0.26
LIG1-211ENST00000596457 MX1P20591 662 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms