RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GSTO1P78417 241 aa17.78■□□□□ 0.44
VRK3-206ENST00000594090 FKBP1CQ5VVH2 108 aa17.78■□□□□ 0.44
VRK3-206ENST00000594090 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.78■□□□□ 0.44
VRK3-206ENST00000594090 PIH1D3Q9NQM4 214 aaKnown RBP17.78■□□□□ 0.44
VRK3-206ENST00000594090 NDUFB9Q9Y6M9 179 aa17.78■□□□□ 0.44
VRK3-206ENST00000594090 BTDP43251 543 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 HDAC1Q13547 482 aaPredicted RBP17.77■□□□□ 0.44
VRK3-206ENST00000594090 TTLL12Q14166 644 aaPredicted RBP17.77■□□□□ 0.44
VRK3-206ENST00000594090 NBPF12Q5TAG4 269 aaPredicted RBP17.77■□□□□ 0.44
VRK3-206ENST00000594090 MOB2Q70IA6 237 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 FAM83AQ86UY5 434 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 TEPSINQ96N21 525 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 TMEM39BQ9GZU3 492 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 USP40Q9NVE5 1235 aa17.77■□□□□ 0.44
VRK3-206ENST00000594090 RFX7Q2KHR2 1363 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 RPAP1Q9BWH6 1393 aaPredicted RBP17.76■□□□□ 0.43
VRK3-206ENST00000594090 IGSF3O75054 1194 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 GRM1Q13255 1194 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 SUPT20HL1Q3ZLR7 823 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 RGMBQ6NW40 437 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 CDAN1Q8IWY9 1227 aa17.76■□□□□ 0.43
VRK3-206ENST00000594090 GPR75-ASB3A0A0A6YYF3 556 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 LDHCP07864 332 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 NFIAQ12857 509 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 PRKG1Q13976 671 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 NAA16Q6N069 864 aaPredicted RBP17.75■□□□□ 0.43
VRK3-206ENST00000594090 ARMC9Q7Z3E5 817 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 ANTXR1Q9H6X2 564 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 FZD1Q9UP38 647 aa17.75■□□□□ 0.43
VRK3-206ENST00000594090 UBE2Q2LH0YL09 131 aa17.74■□□□□ 0.43
VRK3-206ENST00000594090 IDH1O75874 414 aaKnown RBP17.74■□□□□ 0.43
VRK3-206ENST00000594090 ATP5JP18859 108 aa17.74■□□□□ 0.43
VRK3-206ENST00000594090 DNAJC2Q99543 621 aaKnown RBP17.74■□□□□ 0.43
VRK3-206ENST00000594090 FAM198AQ9UFP1 575 aa17.74■□□□□ 0.43
VRK3-206ENST00000594090 PCNTO95613 3336 aa17.74■□□□□ 0.43
VRK3-206ENST00000594090 OTOFQ9HC10 1997 aa17.74■□□□□ 0.43
VRK3-206ENST00000594090 PPP1R12BO60237 982 aaPredicted RBP17.73■□□□□ 0.43
VRK3-206ENST00000594090 ZNF157P51786 506 aaPredicted RBP17.73■□□□□ 0.43
VRK3-206ENST00000594090 RHBDL3P58872 404 aa17.73■□□□□ 0.43
VRK3-206ENST00000594090 IRX6P78412 446 aaPredicted RBP17.73■□□□□ 0.43
VRK3-206ENST00000594090 TCP10Q12799 353 aa17.73■□□□□ 0.43
VRK3-206ENST00000594090 TTF1Q15361 905 aaPredicted RBP17.73■□□□□ 0.43
VRK3-206ENST00000594090 MAP3K11Q16584 847 aa17.73■□□□□ 0.43
VRK3-206ENST00000594090 GCC1Q96CN9 775 aa17.73■□□□□ 0.43
VRK3-206ENST00000594090 IDI2Q9BXS1 227 aa17.73■□□□□ 0.43
VRK3-206ENST00000594090 ANGEL1Q9UNK9 670 aaKnown RBP17.73■□□□□ 0.43
VRK3-206ENST00000594090 FAM155AB1AL88 458 aaPredicted RBP17.72■□□□□ 0.43
VRK3-206ENST00000594090 AOC2O75106 756 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 FAM151AQ8WW52 585 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 BOLA2Q9H3K6 86 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 ECHDC1Q9NTX5 307 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 GOLIM4O00461 696 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 WDHD1O75717 1129 aaPredicted RBP17.72■□□□□ 0.43
VRK3-206ENST00000594090 SLC10A3P09131 477 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 RGS3P49796 1198 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 MAP3K12Q12852 859 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 LDLRAD1Q5T700 205 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 ADGRA1Q86SQ6 560 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 RASAL3Q86YV0 1011 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 CCDC102AQ96A19 550 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 GPATCH3Q96I76 525 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 HAUS7Q99871 368 aa17.72■□□□□ 0.43
VRK3-206ENST00000594090 NOL10Q9BSC4 688 aaKnown RBP17.72■□□□□ 0.43
VRK3-206ENST00000594090 ENTPD3O75355 529 aa17.71■□□□□ 0.43
VRK3-206ENST00000594090 USP2O75604 605 aaPredicted RBP17.71■□□□□ 0.43
VRK3-206ENST00000594090 MAP4K4O95819 1239 aaPredicted RBP17.71■□□□□ 0.43
VRK3-206ENST00000594090 MAP2K2P36507 400 aa17.71■□□□□ 0.43
VRK3-206ENST00000594090 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
VRK3-206ENST00000594090 NOGQ13253 232 aa17.71■□□□□ 0.43
VRK3-206ENST00000594090 MAGEB6Q8N7X4 407 aa17.71■□□□□ 0.43
VRK3-206ENST00000594090 EDC3Q96F86 508 aaKnown RBP17.71■□□□□ 0.43
VRK3-206ENST00000594090 DDX4Q9NQI0 724 aaKnown RBP17.71■□□□□ 0.43
VRK3-206ENST00000594090 PAG1Q9NWQ8 432 aa17.71■□□□□ 0.43
VRK3-206ENST00000594090 AATFQ9NY61 560 aaKnown RBP eCLIP17.71■□□□□ 0.43
VRK3-206ENST00000594090 CDK5RAP2Q96SN8 1893 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 BAG3O95817 575 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 CYP7A1P22680 504 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 TMED8Q6PL24 325 aaPredicted RBP17.7■□□□□ 0.42
VRK3-206ENST00000594090 ZFPM1Q8IX07 1006 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 HOOK2Q96ED9 719 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 RWDD1Q9H446 243 aaPredicted RBP17.7■□□□□ 0.42
VRK3-206ENST00000594090 FOCADQ5VW36 1801 aa17.7■□□□□ 0.42
VRK3-206ENST00000594090 HSPA1AP0DMV8 641 aaKnown RBP17.69■□□□□ 0.42
VRK3-206ENST00000594090 HSPA1BP0DMV9 641 aaKnown RBP17.69■□□□□ 0.42
VRK3-206ENST00000594090 PLCG2P16885 1265 aa17.69■□□□□ 0.42
VRK3-206ENST00000594090 PPP4CP60510 307 aa17.69■□□□□ 0.42
VRK3-206ENST00000594090 PICALMQ13492 652 aa17.69■□□□□ 0.42
VRK3-206ENST00000594090 ANKRD45Q5TZF3 282 aa17.69■□□□□ 0.42
VRK3-206ENST00000594090 TSHZ3Q63HK5 1081 aa17.69■□□□□ 0.42
VRK3-206ENST00000594090 SH3RF3Q8TEJ3 882 aaPredicted RBP17.69■□□□□ 0.42
VRK3-206ENST00000594090 ZBTB47Q9UFB7 747 aaPredicted RBP17.69■□□□□ 0.42
VRK3-206ENST00000594090 MYH7P12883 1935 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 AK9Q5TCS8 1911 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 NPM3O75607 178 aaKnown RBP17.68■□□□□ 0.42
VRK3-206ENST00000594090 SMC5Q8IY18 1101 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 TEX11Q8IYF3 940 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 OTUD7AQ8TE49 926 aaPredicted RBP17.68■□□□□ 0.42
VRK3-206ENST00000594090 CLMNQ96JQ2 1002 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 ZIC5Q96T25 663 aa17.68■□□□□ 0.42
VRK3-206ENST00000594090 TTC41PQ6P2S7 1318 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms