RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 TMEM106CQ9BVX2 250 aa18.41■□□□□ 0.54
PNKP-202ENST00000593706 EYA2O00167 538 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 FGFR2P21802 821 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 SNAPC2Q13487 334 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 APOBEC3HQ6NTF7 200 aaKnown RBP18.4■□□□□ 0.54
PNKP-202ENST00000593706 HHIPL2Q6UWX4 724 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 NBPF11Q86T75 865 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 WDR66Q8TBY9 1149 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 LPIN2Q92539 896 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 MRIQ9BWK5 157 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 SMC4Q9NTJ3 1288 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 PTCH2Q9Y6C5 1203 aa18.4■□□□□ 0.54
PNKP-202ENST00000593706 ATAD5Q96QE3 1844 aa18.39■□□□□ 0.54
PNKP-202ENST00000593706 IRF6O14896 467 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 PPIL2Q13356 520 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 KIF22Q14807 665 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 ZNF333Q96JL9 665 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 ZNF341Q9BYN7 854 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 SIL1Q9H173 461 aa18.39■□□□□ 0.53
PNKP-202ENST00000593706 EN2P19622 333 aaPredicted RBP18.38■□□□□ 0.53
PNKP-202ENST00000593706 MIGA2Q7L4E1 593 aa18.38■□□□□ 0.53
PNKP-202ENST00000593706 ZCCHC17Q9NP64 241 aaKnown RBP18.38■□□□□ 0.53
PNKP-202ENST00000593706 PHIPQ8WWQ0 1821 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 BTBD19C9JJ37 291 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 TLR2O60603 784 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 UBTFL1P0CB47 393 aaPredicted RBP18.37■□□□□ 0.53
PNKP-202ENST00000593706 RFX5P48382 616 aaPredicted RBP18.37■□□□□ 0.53
PNKP-202ENST00000593706 TCP10Q12799 353 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 DIXDC1Q155Q3 683 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 ATP2B3Q16720 1220 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 SLC4A8Q2Y0W8 1093 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 ALDH1L2Q3SY69 923 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 GNL3LQ9NVN8 582 aaKnown RBP18.37■□□□□ 0.53
PNKP-202ENST00000593706 DAGLAQ9Y4D2 1042 aa18.37■□□□□ 0.53
PNKP-202ENST00000593706 MYCP01106 439 aaPredicted RBP18.36■□□□□ 0.53
PNKP-202ENST00000593706 LACTBP83111 547 aaPredicted RBP18.36■□□□□ 0.53
PNKP-202ENST00000593706 FAM151AQ8WW52 585 aa18.36■□□□□ 0.53
PNKP-202ENST00000593706 ECM2O94769 699 aaPredicted RBP18.35■□□□□ 0.53
PNKP-202ENST00000593706 LDHBP07195 334 aaKnown RBP18.35■□□□□ 0.53
PNKP-202ENST00000593706 CT47B1P0C2W7 299 aaPredicted RBP18.35■□□□□ 0.53
PNKP-202ENST00000593706 PRDX5P30044 214 aa18.35■□□□□ 0.53
PNKP-202ENST00000593706 INPP5BP32019 993 aa18.35■□□□□ 0.53
PNKP-202ENST00000593706 PPATQ06203 517 aa18.35■□□□□ 0.53
PNKP-202ENST00000593706 ATG9AQ7Z3C6 839 aa18.35■□□□□ 0.53
PNKP-202ENST00000593706 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.35■□□□□ 0.53
PNKP-202ENST00000593706 ARHGAP39Q9C0H5 1083 aa18.35■□□□□ 0.53
PNKP-202ENST00000593706 CDC42EP5Q6NZY7 148 aa18.34■□□□□ 0.53
PNKP-202ENST00000593706 CEP126Q9P2H0 1117 aa18.34■□□□□ 0.53
PNKP-202ENST00000593706 CIAO1O76071 339 aa18.33■□□□□ 0.52
PNKP-202ENST00000593706 GNRH1P01148 92 aa18.33■□□□□ 0.52
PNKP-202ENST00000593706 NFIAQ12857 509 aa18.33■□□□□ 0.52
PNKP-202ENST00000593706 SH3TC2Q8TF17 1288 aa18.33■□□□□ 0.52
PNKP-202ENST00000593706 FBXO3Q9UK99 471 aa18.33■□□□□ 0.52
PNKP-202ENST00000593706 TRIOBPQ9H2D6 2365 aa18.32■□□□□ 0.52
PNKP-202ENST00000593706 USP40Q9NVE5 1235 aa18.32■□□□□ 0.52
PNKP-202ENST00000593706 CPA4Q9UI42 421 aa18.32■□□□□ 0.52
PNKP-202ENST00000593706 DENND2AQ9ULE3 1009 aa18.32■□□□□ 0.52
PNKP-202ENST00000593706 CDK5RAP2Q96SN8 1893 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 SALL1Q9NSC2 1324 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 PDHXO00330 501 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 SEMA3EO15041 775 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 IL15P40933 162 aaPredicted RBP18.31■□□□□ 0.52
PNKP-202ENST00000593706 PHKA1P46020 1223 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 PRMT2P55345 433 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 HABP4Q5JVS0 413 aaKnown RBP18.31■□□□□ 0.52
PNKP-202ENST00000593706 ANKRD23Q86SG2 305 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 ZGPATQ8N5A5 531 aaKnown RBP18.31■□□□□ 0.52
PNKP-202ENST00000593706 HDAC5Q9UQL6 1122 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 LRRFIP2Q9Y608 721 aaKnown RBP18.31■□□□□ 0.52
PNKP-202ENST00000593706 DOCK3Q8IZD9 2030 aa18.31■□□□□ 0.52
PNKP-202ENST00000593706 MAST2Q6P0Q8 1798 aa18.3■□□□□ 0.52
PNKP-202ENST00000593706 DZIP1Q86YF9 867 aaKnown RBP18.3■□□□□ 0.52
PNKP-202ENST00000593706 FAM198AQ9UFP1 575 aa18.3■□□□□ 0.52
PNKP-202ENST00000593706 ZNF112Q9UJU3 913 aa18.3■□□□□ 0.52
PNKP-202ENST00000593706 KCNH4Q9UQ05 1017 aa18.3■□□□□ 0.52
PNKP-202ENST00000593706 PA2G4Q9UQ80 394 aaKnown RBP18.3■□□□□ 0.52
PNKP-202ENST00000593706 RANBP2P49792 3224 aaKnown RBP18.29■□□□□ 0.52
PNKP-202ENST00000593706 NOL9Q5SY16 702 aaKnown RBP18.29■□□□□ 0.52
PNKP-202ENST00000593706 C17orf99Q6UX52 265 aa18.29■□□□□ 0.52
PNKP-202ENST00000593706 PARK7Q99497 189 aaKnown RBP18.29■□□□□ 0.52
PNKP-202ENST00000593706 API5Q9BZZ5 524 aaKnown RBP18.29■□□□□ 0.52
PNKP-202ENST00000593706 NOB1Q9ULX3 412 aaKnown RBP18.29■□□□□ 0.52
PNKP-202ENST00000593706 LOC285556D6RIA3 1793 aa18.29■□□□□ 0.52
PNKP-202ENST00000593706 SZT2Q5T011 3432 aa18.28■□□□□ 0.52
PNKP-202ENST00000593706 FMNL1O95466 1100 aaPredicted RBP18.28■□□□□ 0.52
PNKP-202ENST00000593706 PSMC4P43686 418 aa18.28■□□□□ 0.52
PNKP-202ENST00000593706 RGS3P49796 1198 aa18.28■□□□□ 0.52
PNKP-202ENST00000593706 RARSP54136 660 aaKnown RBP18.28■□□□□ 0.52
PNKP-202ENST00000593706 ZSCAN29Q8IWY8 852 aaPredicted RBP18.28■□□□□ 0.52
PNKP-202ENST00000593706 PICK1Q9NRD5 415 aa18.28■□□□□ 0.52
PNKP-202ENST00000593706 MYO5AQ9Y4I1 1855 aaKnown RBP18.28■□□□□ 0.52
PNKP-202ENST00000593706 FOCADQ5VW36 1801 aa18.28■□□□□ 0.52
PNKP-202ENST00000593706 MYPNQ86TC9 1320 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 ADGRA2Q96PE1 1338 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 HOXD10P28358 340 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 ADORA1P30542 326 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 CCDC102BQ68D86 513 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 RAET1EQ8TD07 263 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 TRIM47Q96LD4 638 aa18.27■□□□□ 0.52
PNKP-202ENST00000593706 ABCF2Q9UG63 623 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms