RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CAP1Q01518 475 aa29.79■■■□□ 2.36
LSM4-202ENST00000593564 FAM151AQ8WW52 585 aa29.79■■■□□ 2.36
LSM4-202ENST00000593564 SALL1Q9NSC2 1324 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 CETPP11597 493 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 PRDX5P30044 214 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 DIXDC1Q155Q3 683 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 CDC42EP5Q6NZY7 148 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 ZNF341Q9BYN7 854 aa29.78■■■□□ 2.36
LSM4-202ENST00000593564 ZCCHC17Q9NP64 241 aaKnown RBP29.78■■■□□ 2.36
LSM4-202ENST00000593564 SEMA3EO15041 775 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 ZBTB22O15209 634 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 PPIL2Q13356 520 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 ARMC5Q96C12 935 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 COPRSQ9NQ92 184 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 PA2G4Q9UQ80 394 aaKnown RBP29.77■■■□□ 2.36
LSM4-202ENST00000593564 CENPFP49454 3210 aa29.77■■■□□ 2.36
LSM4-202ENST00000593564 IRF6O14896 467 aa29.76■■■□□ 2.35
LSM4-202ENST00000593564 LDHBP07195 334 aaKnown RBP29.76■■■□□ 2.35
LSM4-202ENST00000593564 SNAPC2Q13487 334 aa29.76■■■□□ 2.35
LSM4-202ENST00000593564 MEIS3Q99687 375 aa29.76■■■□□ 2.35
LSM4-202ENST00000593564 DENND2AQ9ULE3 1009 aa29.76■■■□□ 2.35
LSM4-202ENST00000593564 WDHD1O75717 1129 aaPredicted RBP29.75■■■□□ 2.35
LSM4-202ENST00000593564 PHKA1P46020 1223 aa29.75■■■□□ 2.35
LSM4-202ENST00000593564 RARSP54136 660 aaKnown RBP29.75■■■□□ 2.35
LSM4-202ENST00000593564 ARHGEF6Q15052 776 aa29.75■■■□□ 2.35
LSM4-202ENST00000593564 MIGA2Q7L4E1 593 aa29.75■■■□□ 2.35
LSM4-202ENST00000593564 CCER2I3L3R5 266 aa29.74■■■□□ 2.35
LSM4-202ENST00000593564 NFIAQ12857 509 aa29.74■■■□□ 2.35
LSM4-202ENST00000593564 ARHGAP45Q92619 1136 aa29.74■■■□□ 2.35
LSM4-202ENST00000593564 BTBD19C9JJ37 291 aa29.73■■■□□ 2.35
LSM4-202ENST00000593564 PPATQ06203 517 aa29.73■■■□□ 2.35
LSM4-202ENST00000593564 TCP10Q12799 353 aa29.73■■■□□ 2.35
LSM4-202ENST00000593564 ZNF112Q9UJU3 913 aa29.73■■■□□ 2.35
LSM4-202ENST00000593564 POTEFA5A3E0 1075 aa29.72■■■□□ 2.35
LSM4-202ENST00000593564 TLR2O60603 784 aa29.72■■■□□ 2.35
LSM4-202ENST00000593564 INPP5BP32019 993 aa29.72■■■□□ 2.35
LSM4-202ENST00000593564 USP40Q9NVE5 1235 aa29.72■■■□□ 2.35
LSM4-202ENST00000593564 FAM198AQ9UFP1 575 aa29.72■■■□□ 2.35
LSM4-202ENST00000593564 ADORA1P30542 326 aa29.71■■■□□ 2.35
LSM4-202ENST00000593564 CCDC102BQ68D86 513 aa29.71■■■□□ 2.35
LSM4-202ENST00000593564 ZGPATQ8N5A5 531 aaKnown RBP29.71■■■□□ 2.35
LSM4-202ENST00000593564 KIAA0100Q14667 2235 aaKnown RBP29.7■■■□□ 2.35
LSM4-202ENST00000593564 GNAI3P08754 354 aa29.7■■■□□ 2.35
LSM4-202ENST00000593564 MKI67P46013 3256 aaKnown RBP29.69■■■□□ 2.34
LSM4-202ENST00000593564 PDS5AQ29RF7 1337 aaKnown RBP29.69■■■□□ 2.34
LSM4-202ENST00000593564 MTX1Q13505 466 aa29.68■■■□□ 2.34
LSM4-202ENST00000593564 NOL9Q5SY16 702 aaKnown RBP29.68■■■□□ 2.34
LSM4-202ENST00000593564 KCNH4Q9UQ05 1017 aa29.68■■■□□ 2.34
LSM4-202ENST00000593564 PTCH2Q9Y6C5 1203 aa29.68■■■□□ 2.34
LSM4-202ENST00000593564 GAKO14976 1311 aa29.68■■■□□ 2.34
LSM4-202ENST00000593564 RBBP6Q7Z6E9 1792 aaKnown RBP29.67■■■□□ 2.34
LSM4-202ENST00000593564 RASGRF1Q13972 1273 aa29.67■■■□□ 2.34
LSM4-202ENST00000593564 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.67■■■□□ 2.34
LSM4-202ENST00000593564 ZNF333Q96JL9 665 aa29.67■■■□□ 2.34
LSM4-202ENST00000593564 BRCA2P51587 3418 aa29.66■■■□□ 2.34
LSM4-202ENST00000593564 SRGAP3O43295 1099 aa29.66■■■□□ 2.34
LSM4-202ENST00000593564 TIMM10P62072 90 aa29.66■■■□□ 2.34
LSM4-202ENST00000593564 LACTBP83111 547 aaPredicted RBP29.66■■■□□ 2.34
LSM4-202ENST00000593564 KIF22Q14807 665 aa29.66■■■□□ 2.34
LSM4-202ENST00000593564 IDI2Q9BXS1 227 aa29.66■■■□□ 2.34
LSM4-202ENST00000593564 SLC9C1Q4G0N8 1177 aa29.65■■■□□ 2.34
LSM4-202ENST00000593564 ANKRD23Q86SG2 305 aa29.65■■■□□ 2.34
LSM4-202ENST00000593564 ZFPM1Q8IX07 1006 aa29.65■■■□□ 2.34
LSM4-202ENST00000593564 AKAP2Q9Y2D5 859 aa29.65■■■□□ 2.34
LSM4-202ENST00000593564 ATRNL1Q5VV63 1379 aa29.64■■■□□ 2.34
LSM4-202ENST00000593564 A0A1B0GUL7 405 aa29.64■■■□□ 2.34
LSM4-202ENST00000593564 ENTPD3O75355 529 aa29.64■■■□□ 2.34
LSM4-202ENST00000593564 NBPF11Q86T75 865 aa29.64■■■□□ 2.34
LSM4-202ENST00000593564 DZIP1Q86YF9 867 aaKnown RBP29.64■■■□□ 2.34
LSM4-202ENST00000593564 ARHGAP39Q9C0H5 1083 aa29.64■■■□□ 2.34
LSM4-202ENST00000593564 RFX7Q2KHR2 1363 aa29.64■■■□□ 2.33
LSM4-202ENST00000593564 GNRH1P01148 92 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 RGS3P49796 1198 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 TFCP2Q12800 502 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 C17orf99Q6UX52 265 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 SLF2Q8IX21 1173 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 FAM163AQ96GL9 167 aaPredicted RBP29.63■■■□□ 2.33
LSM4-202ENST00000593564 XAGE2Q96GT9 111 aa29.63■■■□□ 2.33
LSM4-202ENST00000593564 IPO8O15397 1037 aaKnown RBP29.62■■■□□ 2.33
LSM4-202ENST00000593564 MVPQ14764 893 aaKnown RBP29.62■■■□□ 2.33
LSM4-202ENST00000593564 SPTY2D1Q68D10 685 aaPredicted RBP29.62■■■□□ 2.33
LSM4-202ENST00000593564 TMEM106CQ9BVX2 250 aa29.62■■■□□ 2.33
LSM4-202ENST00000593564 ABCF2Q9UG63 623 aa29.62■■■□□ 2.33
LSM4-202ENST00000593564 AK9Q5TCS8 1911 aa29.62■■■□□ 2.33
LSM4-202ENST00000593564 PDHXO00330 501 aa29.61■■■□□ 2.33
LSM4-202ENST00000593564 EN2P19622 333 aaPredicted RBP29.61■■■□□ 2.33
LSM4-202ENST00000593564 MOGSQ13724 837 aa29.61■■■□□ 2.33
LSM4-202ENST00000593564 MYH2Q9UKX2 1941 aa29.61■■■□□ 2.33
LSM4-202ENST00000593564 PHF20L1A8MW92 1017 aa29.6■■■□□ 2.33
LSM4-202ENST00000593564 TRIM27P14373 513 aa29.6■■■□□ 2.33
LSM4-202ENST00000593564 ADGRA2Q96PE1 1338 aa29.6■■■□□ 2.33
LSM4-202ENST00000593564 CXCL11O14625 94 aa29.59■■■□□ 2.33
LSM4-202ENST00000593564 PRMT2P55345 433 aa29.59■■■□□ 2.33
LSM4-202ENST00000593564 ATF7IPQ6VMQ6 1270 aa29.59■■■□□ 2.33
LSM4-202ENST00000593564 SH3BP5LQ7L8J4 393 aa29.59■■■□□ 2.33
LSM4-202ENST00000593564 CPA4Q9UI42 421 aa29.59■■■□□ 2.33
LSM4-202ENST00000593564 MROH7-TTC4A0A0A0MT08 1334 aa29.58■■■□□ 2.33
LSM4-202ENST00000593564 BTDP43251 543 aa29.58■■■□□ 2.33
LSM4-202ENST00000593564 MAP3K10Q02779 954 aa29.58■■■□□ 2.33
LSM4-202ENST00000593564 SCYL3Q8IZE3 742 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms