RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	PLBD2	Q8NHP8	589 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	APPBP2	Q92624	585 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CEP89	Q96ST8	783 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	NAPG	Q99747	312 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	KCND1	Q9NSA2	647 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ATG3	Q9NT62	314 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ANGEL1	Q9UNK9	670 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	OVOS2	A0A0G2JMS6	1433 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	MET	P08581	1390 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ABCC12	Q96J65	1359 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CACNA1F	O60840	1977 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790		A0A1B0GVL5	298 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ANKRD18B	A2A2Z9	1011 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	N4BP3	O15049	544 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	PYGB	P11216	843 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ZSCAN20	P17040	1043 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	EPS15	P42566	896 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	NAP1L1	P55209	391 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TFCP2	Q12800	502 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CYP26C1	Q6V0L0	522 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	MFSD6	Q6ZSS7	791 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	COPS6	Q7L5N1	327 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CATIP	Q7Z7H3	387 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	VPS37D	Q86XT2	251 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	NSUN7	Q8NE18	718 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SUCLG2	Q96I99	432 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	DCAF5	Q96JK2	942 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TCEANC2	Q96MN5	208 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	FUCA2	Q9BTY2	467 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	NUP58	Q9BVL2	599 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	EFCC1	Q9HA90	598 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	RAI14	Q9P0K7	980 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	KCNH3	Q9ULD8	1083 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	MTMR7	Q9Y216	660 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790		A0A0D9SFI3	127 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	TRIM75P	A6NK02	468 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790		E7EWF7	191 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	EBAG9	O00559	213 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ERCC5	P28715	1186 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	KIF5B	P33176	963 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SMC1A	Q14683	1233 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	IFI16	Q16666	785 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	RTN1	Q16799	776 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ADCK5	Q3MIX3	580 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CC2D2B	Q6DHV5	1058 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	KRBA2	Q6ZNG9	492 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	B4GALNT4	Q76KP1	1039 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ARFGAP2	Q8N6H7	521 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	USHBP1	Q8N6Y0	703 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	FAM71B	Q8TC56	605 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	FERMT2	Q96AC1	680 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	EAF2	Q96CJ1	260 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CDK5RAP3	Q96JB5	506 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CARD6	Q9BX69	1037 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ZNF287	Q9HBT7	754 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	RBM28	Q9NW13	759 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	TMEM51	Q9NW97	253 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	4.01	□□□□□ -1.77	2e-48	■□□□□ 10.3
VMP1-216	ENST00000592790	CPS1	P31327	1500 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	BICDL2	A1A5D9	508 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	EYA2	O00167	538 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	HSF2BP	O75031	334 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CIAO1	O76071	339 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	DEXI	O95424	95 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	OAS2	P29728	719 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SEMA3F	Q13275	785 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	WTAP	Q15007	396 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SLC39A14	Q15043	492 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ZSCAN26	Q16670	478 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CWF19L2	Q2TBE0	894 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	LMBR1L	Q6UX01	489 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	FBXO18	Q8NFZ0	1043 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SMARCC2	Q8TAQ2	1214 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	TAF4B	Q92750	862 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	USP28	Q96RU2	1077 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	TSG101	Q99816	390 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	RAB34	Q9BZG1	259 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	BMP2K	Q9NSY1	1161 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	PCDHA7	Q9UN72	937 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	PPP2R2C	Q9Y2T4	447 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SLIT1	O75093	1534 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CARMIL3	Q8ND23	1372 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	NEURL1B	A8MQ27	555 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CLGN	O14967	610 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	JAK2	O60674	1132 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	TACC1	O75410	805 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	IDH1	O75874	414 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	CALML3	P27482	149 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	NT5C2	P49902	561 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	GTF2A1	P52655	376 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ERCC6L	Q2NKX8	1250 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	RRP12	Q5JTH9	1297 aa	Known RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	GBP6	Q6ZN66	633 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	IQUB	Q8NA54	791 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	AFAP1L1	Q8TED9	768 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	SLC26A6	Q9BXS9	759 aa		4.01	□□□□□ -1.77
VMP1-216	ENST00000592790	YY1AP1	Q9H869	796 aa		4.01	□□□□□ -1.77

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