RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 DAGLAQ9Y4D2 1042 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 RPAP1Q9BWH6 1393 aaPredicted RBP13.49□□□□□ -0.25
LIG3-214ENST00000592244 AOX1Q06278 1338 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 IGSF3O75054 1194 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 WDHD1O75717 1129 aaPredicted RBP13.49□□□□□ -0.25
LIG3-214ENST00000592244 CACNB3P54284 484 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 MAP3K9P80192 1104 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 DIXDC1Q155Q3 683 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 TTC39AQ5SRH9 613 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 SPATA5Q8NB90 893 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 PANK1Q8TE04 598 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 FAM151AQ8WW52 585 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 WNK4Q96J92 1243 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 TEPSINQ96N21 525 aa13.49□□□□□ -0.25
LIG3-214ENST00000592244 NOL10Q9BSC4 688 aaKnown RBP13.49□□□□□ -0.25
LIG3-214ENST00000592244 NOP58Q9Y2X3 529 aaKnown RBP13.49□□□□□ -0.25
LIG3-214ENST00000592244 ARAP2Q8WZ64 1704 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 MAP4K4O95819 1239 aaPredicted RBP13.48□□□□□ -0.25
LIG3-214ENST00000592244 ARID4AP29374 1257 aaPredicted RBP13.48□□□□□ -0.25
LIG3-214ENST00000592244 TNNI3KQ59H18 835 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 CDC42EP5Q6NZY7 148 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 CEP85Q6P2H3 762 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 FAM163AQ96GL9 167 aaPredicted RBP13.48□□□□□ -0.25
LIG3-214ENST00000592244 LRP2BPQ9P2M1 347 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 FPGT-TNNI3KV9GXZ4 949 aa13.48□□□□□ -0.25
LIG3-214ENST00000592244 SSC5DA1L4H1 1573 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 NOM1Q5C9Z4 860 aaKnown RBP13.47□□□□□ -0.25
LIG3-214ENST00000592244 RPAP2Q8IXW5 612 aaPredicted RBP13.47□□□□□ -0.25
LIG3-214ENST00000592244 CLMNQ96JQ2 1002 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 WRNIP1Q96S55 665 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 ZNF341Q9BYN7 854 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 ELP3Q9H9T3 547 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 RAI14Q9P0K7 980 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 HMG20BQ9P0W2 317 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 FZD1Q9UP38 647 aa13.47□□□□□ -0.25
LIG3-214ENST00000592244 GAKO14976 1311 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 ENTPD3O75355 529 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 GTF2A2P52657 109 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 TCP10Q12799 353 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 DGKZQ13574 1117 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 PDE3AQ14432 1141 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 ZSCAN29Q8IWY8 852 aaPredicted RBP13.46□□□□□ -0.25
LIG3-214ENST00000592244 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIG3-214ENST00000592244 OPTNQ96CV9 577 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 ABHD8Q96I13 439 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 ZNF512BQ96KM6 892 aaPredicted RBP13.46□□□□□ -0.25
LIG3-214ENST00000592244 CFHR5Q9BXR6 569 aa13.46□□□□□ -0.25
LIG3-214ENST00000592244 ECM29Q5VYK3 1845 aa13.46□□□□□ -0.26
LIG3-214ENST00000592244 MROH7-TTC4A0A0A0MT08 1334 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 TBC1D8O95759 1140 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 BAG3O95817 575 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 PLCG2P16885 1265 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 BTDP43251 543 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 MECOMQ03112 1051 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 VGLL4Q14135 290 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 PKN2Q16513 984 aaKnown RBP13.45□□□□□ -0.26
LIG3-214ENST00000592244 ERO1BQ86YB8 467 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 IFNL1Q8IU54 200 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 IDI2Q9BXS1 227 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 COG6Q9Y2V7 657 aa13.45□□□□□ -0.26
LIG3-214ENST00000592244 GPR75-ASB3A0A0A6YYF3 556 aa13.44□□□□□ -0.26
LIG3-214ENST00000592244 MCAMP43121 646 aa13.44□□□□□ -0.26
LIG3-214ENST00000592244 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.44□□□□□ -0.26
LIG3-214ENST00000592244 CTU1Q7Z7A3 348 aaKnown RBP13.44□□□□□ -0.26
LIG3-214ENST00000592244 CLASRPQ8N2M8 674 aaKnown RBP13.44□□□□□ -0.26
LIG3-214ENST00000592244 DBNDD2Q9BQY9 259 aa13.44□□□□□ -0.26
LIG3-214ENST00000592244 MCOLN1Q9GZU1 580 aa13.44□□□□□ -0.26
LIG3-214ENST00000592244 SPDYE5A6NIY4 337 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 GPR25O00155 361 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 FKTNO75072 461 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 RAB11FIP3O75154 756 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 RGS3P49796 1198 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 NFIAQ12857 509 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 SNAPC2Q13487 334 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 NAA16Q6N069 864 aaPredicted RBP13.43□□□□□ -0.26
LIG3-214ENST00000592244 TMED8Q6PL24 325 aaPredicted RBP13.43□□□□□ -0.26
LIG3-214ENST00000592244 MIGA2Q7L4E1 593 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 CERS3Q8IU89 383 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 CDAN1Q8IWY9 1227 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 NSUN4Q96CB9 384 aaKnown RBP13.43□□□□□ -0.26
LIG3-214ENST00000592244 KIF1BPQ96EK5 621 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 OTUD5Q96G74 571 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 ZBTB40Q9NUA8 1239 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 FAM198AQ9UFP1 575 aa13.43□□□□□ -0.26
LIG3-214ENST00000592244 TESPA1A2RU30 521 aaPredicted RBP13.42□□□□□ -0.26
LIG3-214ENST00000592244 NPM3O75607 178 aaKnown RBP13.42□□□□□ -0.26
LIG3-214ENST00000592244 CETPP11597 493 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 ARHGEF6Q15052 776 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 TBC1D9Q6ZT07 1266 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 AACSQ86V21 672 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 ZNF296Q8WUU4 475 aaPredicted RBP13.42□□□□□ -0.26
LIG3-214ENST00000592244 PICK1Q9NRD5 415 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 EXOC6BQ9Y2D4 811 aa13.42□□□□□ -0.26
LIG3-214ENST00000592244 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.42□□□□□ -0.26
LIG3-214ENST00000592244 CCL15-CCL14A0A0B4J2E2 113 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 CCDC85CA6NKD9 419 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 IFIT2P09913 472 aaKnown RBP13.41□□□□□ -0.26
LIG3-214ENST00000592244 PPATQ06203 517 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 PPIL2Q13356 520 aa13.41□□□□□ -0.26
LIG3-214ENST00000592244 PICALMQ13492 652 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms