RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 SALL1Q9NSC2 1324 aa17.13■□□□□ 0.33
CLIP3-205ENST00000592017 TBC1D8O95759 1140 aa17.12■□□□□ 0.33
CLIP3-205ENST00000592017 LDHBP07195 334 aaKnown RBP17.12■□□□□ 0.33
CLIP3-205ENST00000592017 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-205ENST00000592017 ANKRD13AQ8IZ07 590 aa17.12■□□□□ 0.33
CLIP3-205ENST00000592017 DBNDD2Q9BQY9 259 aa17.12■□□□□ 0.33
CLIP3-205ENST00000592017 BCL11AQ9H165 835 aa17.12■□□□□ 0.33
CLIP3-205ENST00000592017 SREBF2Q12772 1141 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 DGKZQ13574 1117 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 CDC42EP5Q6NZY7 148 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 FAM83AQ86UY5 434 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 ERC1Q8IUD2 1116 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 SIRT2Q8IXJ6 389 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 R3HDMLQ9H3Y0 253 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 GPR108Q9NPR9 543 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 TMOD2Q9NZR1 351 aa17.11■□□□□ 0.33
CLIP3-205ENST00000592017 MANSC4A6NHS7 340 aaPredicted RBP17.1■□□□□ 0.33
CLIP3-205ENST00000592017 ZBTB48P10074 688 aaPredicted RBP17.1■□□□□ 0.33
CLIP3-205ENST00000592017 HSP90AB4PQ58FF6 505 aa17.1■□□□□ 0.33
CLIP3-205ENST00000592017 TTC39AQ5SRH9 613 aa17.1■□□□□ 0.33
CLIP3-205ENST00000592017 PI16Q6UXB8 463 aa17.1■□□□□ 0.33
CLIP3-205ENST00000592017 CCDC8Q9H0W5 538 aaPredicted RBP17.1■□□□□ 0.33
CLIP3-205ENST00000592017 ELP3Q9H9T3 547 aa17.1■□□□□ 0.33
CLIP3-205ENST00000592017 TLR7Q9NYK1 1049 aaKnown RBP17.1■□□□□ 0.33
CLIP3-205ENST00000592017 ABCF2Q9UG63 623 aa17.1■□□□□ 0.33
CLIP3-205ENST00000592017 MAP3K9P80192 1104 aa17.09■□□□□ 0.33
CLIP3-205ENST00000592017 NFIAQ12857 509 aa17.09■□□□□ 0.33
CLIP3-205ENST00000592017 ZGPATQ8N5A5 531 aaKnown RBP17.09■□□□□ 0.33
CLIP3-205ENST00000592017 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLIP3-205ENST00000592017 CNKSR2Q8WXI2 1034 aa17.09■□□□□ 0.33
CLIP3-205ENST00000592017 IL1RAPL2Q9NP60 686 aa17.09■□□□□ 0.33
CLIP3-205ENST00000592017 USP40Q9NVE5 1235 aa17.09■□□□□ 0.33
CLIP3-205ENST00000592017 PDS5AQ29RF7 1337 aaKnown RBP17.09■□□□□ 0.33
CLIP3-205ENST00000592017 CASP8AP2Q9UKL3 1982 aa17.08■□□□□ 0.33
CLIP3-205ENST00000592017 MYH13Q9UKX3 1938 aa17.08■□□□□ 0.33
CLIP3-205ENST00000592017 IGF2BP3O00425 579 aaKnown RBP eCLIP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 UQCRFS1P1P0C7P4 283 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 ARID4AP29374 1257 aaPredicted RBP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 INHBEP58166 350 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 VGLL4Q14135 290 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 CCDC158Q5M9N0 1113 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 AACSQ86V21 672 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 DZIP1Q86YF9 867 aaKnown RBP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 IFNL1Q8IU54 200 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 SPATA5Q8NB90 893 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 ZNF296Q8WUU4 475 aaPredicted RBP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 EAF2Q96CJ1 260 aaPredicted RBP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 HMG20BQ9P0W2 317 aa17.08■□□□□ 0.32
CLIP3-205ENST00000592017 DBNLQ9UJU6 430 aaKnown RBP17.08■□□□□ 0.32
CLIP3-205ENST00000592017 GAKO14976 1311 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 CCDC85CA6NKD9 419 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 GPR25O00155 361 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 MCAMP43121 646 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 TCP10Q12799 353 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 ZFPM1Q8IX07 1006 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 RHPN1Q8TCX5 695 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 FAM151AQ8WW52 585 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 OPTNQ96CV9 577 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 CRBNQ96SW2 442 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 PTPN18Q99952 460 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 CFHR5Q9BXR6 569 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 FAM198AQ9UFP1 575 aa17.07■□□□□ 0.32
CLIP3-205ENST00000592017 TESPA1A2RU30 521 aaPredicted RBP17.06■□□□□ 0.32
CLIP3-205ENST00000592017 NOM1Q5C9Z4 860 aaKnown RBP17.06■□□□□ 0.32
CLIP3-205ENST00000592017 TBC1D9Q6ZT07 1266 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 MIGA2Q7L4E1 593 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 KIF1BPQ96EK5 621 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 FAM163AQ96GL9 167 aaPredicted RBP17.06■□□□□ 0.32
CLIP3-205ENST00000592017 MS4A4AQ96JQ5 239 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 SNRKQ9NRH2 765 aa17.06■□□□□ 0.32
CLIP3-205ENST00000592017 ECM29Q5VYK3 1845 aa17.05■□□□□ 0.32
CLIP3-205ENST00000592017 ALDH1A1P00352 501 aa17.05■□□□□ 0.32
CLIP3-205ENST00000592017 SPTY2D1Q68D10 685 aaPredicted RBP17.05■□□□□ 0.32
CLIP3-205ENST00000592017 ERICH6Q7L0X2 663 aa17.05■□□□□ 0.32
CLIP3-205ENST00000592017 CTU1Q7Z7A3 348 aaKnown RBP17.05■□□□□ 0.32
CLIP3-205ENST00000592017 ZKSCAN4Q969J2 545 aaPredicted RBP17.05■□□□□ 0.32
CLIP3-205ENST00000592017 SNCAIPQ9Y6H5 919 aa17.05■□□□□ 0.32
CLIP3-205ENST00000592017 RAB11FIP3O75154 756 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 MECOMQ03112 1051 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 CLASRPQ8N2M8 674 aaKnown RBP17.04■□□□□ 0.32
CLIP3-205ENST00000592017 BRI3BPQ8WY22 251 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 WRNIP1Q96S55 665 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 RAI14Q9P0K7 980 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 CSADQ9Y600 493 aa17.04■□□□□ 0.32
CLIP3-205ENST00000592017 RPAP1Q9BWH6 1393 aaPredicted RBP17.03■□□□□ 0.32
CLIP3-205ENST00000592017 SPDYE5A6NIY4 337 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 IFIT2P09913 472 aaKnown RBP17.03■□□□□ 0.32
CLIP3-205ENST00000592017 DCAF15Q66K64 600 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 HOOK2Q96ED9 719 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 OTUD5Q96G74 571 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 IDI2Q9BXS1 227 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 ZNF341Q9BYN7 854 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 LRP2BPQ9P2M1 347 aa17.03■□□□□ 0.32
CLIP3-205ENST00000592017 FKTNO75072 461 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 WDHD1O75717 1129 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-205ENST00000592017 INPP5BP32019 993 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 BTDP43251 543 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 ZAP70P43403 619 aa17.02■□□□□ 0.32
CLIP3-205ENST00000592017 RGS3P49796 1198 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms