RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 WNK4Q96J92 1243 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 CLMNQ96JQ2 1002 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 USP40Q9NVE5 1235 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 DDX19BQ9UMR2 479 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 CSADQ9Y600 493 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 SSC5DA1L4H1 1573 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 ALDH1A1P00352 501 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 TNNI3KQ59H18 835 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 TTC39AQ5SRH9 613 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 DCAF15Q66K64 600 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 CDC42EP5Q6NZY7 148 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 CEP85Q6P2H3 762 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 FAM151AQ8WW52 585 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 NOP58Q9Y2X3 529 aaKnown RBP15.22■□□□□ 0.03
SS18-225ENST00000585121 FPGT-TNNI3KV9GXZ4 949 aa15.22■□□□□ 0.03
SS18-225ENST00000585121 ARID4AP29374 1257 aaPredicted RBP15.21■□□□□ 0.03
SS18-225ENST00000585121 GSTO1P78417 241 aa15.21■□□□□ 0.03
SS18-225ENST00000585121 ERC1Q8IUD2 1116 aa15.21■□□□□ 0.03
SS18-225ENST00000585121 HMG20BQ9P0W2 317 aa15.21■□□□□ 0.03
SS18-225ENST00000585121 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.21■□□□□ 0.03
SS18-225ENST00000585121 LDHCP07864 332 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 HSP90AB4PQ58FF6 505 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 OTUD7BQ6GQQ9 843 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 CDAN1Q8IWY9 1227 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 ELP3Q9H9T3 547 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 COG6Q9Y2V7 657 aa15.2■□□□□ 0.02
SS18-225ENST00000585121 HMMRO75330 724 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 TCP10Q12799 353 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 DGKZQ13574 1117 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 FAM163AQ96GL9 167 aaPredicted RBP15.19■□□□□ 0.02
SS18-225ENST00000585121 RAI14Q9P0K7 980 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 LRP2BPQ9P2M1 347 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 MYH13Q9UKX3 1938 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 GAKO14976 1311 aa15.19■□□□□ 0.02
SS18-225ENST00000585121 RPAP1Q9BWH6 1393 aaPredicted RBP15.19■□□□□ 0.02
SS18-225ENST00000585121 TBC1D8O95759 1140 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 MECOMQ03112 1051 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 VGLL4Q14135 290 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.18■□□□□ 0.02
SS18-225ENST00000585121 RPAP2Q8IXW5 612 aaPredicted RBP15.18■□□□□ 0.02
SS18-225ENST00000585121 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.18■□□□□ 0.02
SS18-225ENST00000585121 OPTNQ96CV9 577 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 ABHD8Q96I13 439 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 WRNIP1Q96S55 665 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 DBNDD2Q9BQY9 259 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 ZNF341Q9BYN7 854 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 AKAP11Q9UKA4 1901 aa15.18■□□□□ 0.02
SS18-225ENST00000585121 MCAMP43121 646 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 BTDP43251 543 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 NFIAQ12857 509 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 IFNL1Q8IU54 200 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 NOL10Q9BSC4 688 aaKnown RBP15.17■□□□□ 0.02
SS18-225ENST00000585121 MCOLN1Q9GZU1 580 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 MROH7-TTC4A0A0A0MT08 1334 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 ENTPD3O75355 529 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 MAP4K4O95819 1239 aaPredicted RBP15.17■□□□□ 0.02
SS18-225ENST00000585121 PDE3AQ14432 1141 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 PI16Q6UXB8 463 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 TBC1D9Q6ZT07 1266 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 MIGA2Q7L4E1 593 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 ZSCAN29Q8IWY8 852 aaPredicted RBP15.17■□□□□ 0.02
SS18-225ENST00000585121 IDI2Q9BXS1 227 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 FAM198AQ9UFP1 575 aa15.17■□□□□ 0.02
SS18-225ENST00000585121 GJA5P36382 358 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 RGS3P49796 1198 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 GTF2A2P52657 109 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 NSUN4Q96CB9 384 aaKnown RBP15.16■□□□□ 0.02
SS18-225ENST00000585121 ZNF512BQ96KM6 892 aaPredicted RBP15.16■□□□□ 0.02
SS18-225ENST00000585121 CFHR5Q9BXR6 569 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 CCDC8Q9H0W5 538 aaPredicted RBP15.16■□□□□ 0.02
SS18-225ENST00000585121 SNRKQ9NRH2 765 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 ZBTB40Q9NUA8 1239 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 EXOC6BQ9Y2D4 811 aa15.16■□□□□ 0.02
SS18-225ENST00000585121 CASP8AP2Q9UKL3 1982 aa15.15■□□□□ 0.02
SS18-225ENST00000585121 GPR75-ASB3A0A0A6YYF3 556 aa15.15■□□□□ 0.02
SS18-225ENST00000585121 GPR25O00155 361 aa15.15■□□□□ 0.02
SS18-225ENST00000585121 NOM1Q5C9Z4 860 aaKnown RBP15.15■□□□□ 0.02
SS18-225ENST00000585121 CTU1Q7Z7A3 348 aaKnown RBP15.15■□□□□ 0.02
SS18-225ENST00000585121 ERO1BQ86YB8 467 aa15.15■□□□□ 0.02
SS18-225ENST00000585121 ZKSCAN4Q969J2 545 aaPredicted RBP15.15■□□□□ 0.02
SS18-225ENST00000585121 OTUD5Q96G74 571 aa15.15■□□□□ 0.02
SS18-225ENST00000585121 IGSF3O75054 1194 aa15.14■□□□□ 0.01
SS18-225ENST00000585121 FKTNO75072 461 aa15.14■□□□□ 0.01
SS18-225ENST00000585121 WDHD1O75717 1129 aaPredicted RBP15.14■□□□□ 0.01
SS18-225ENST00000585121 PICALMQ13492 652 aa15.14■□□□□ 0.01
SS18-225ENST00000585121 ZNF296Q8WUU4 475 aaPredicted RBP15.14■□□□□ 0.01
SS18-225ENST00000585121 EAF2Q96CJ1 260 aaPredicted RBP15.14■□□□□ 0.01
SS18-225ENST00000585121 DBNLQ9UJU6 430 aaKnown RBP15.14■□□□□ 0.01
SS18-225ENST00000585121 TESPA1A2RU30 521 aaPredicted RBP15.13■□□□□ 0.01
SS18-225ENST00000585121 SPDYE5A6NIY4 337 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 CCDC85CA6NKD9 419 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 IGF2BP3O00425 579 aaKnown RBP eCLIP15.13■□□□□ 0.01
SS18-225ENST00000585121 BAG3O95817 575 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 NAA16Q6N069 864 aaPredicted RBP15.13■□□□□ 0.01
SS18-225ENST00000585121 AACSQ86V21 672 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 CNKSR2Q8WXI2 1034 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 KIF1BPQ96EK5 621 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 SNCAIPQ9Y6H5 919 aa15.13■□□□□ 0.01
SS18-225ENST00000585121 CCL15-CCL14A0A0B4J2E2 113 aa15.12■□□□□ 0.01
SS18-225ENST00000585121 RAB11FIP3O75154 756 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms