RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 FAM43AQ8N2R8 423 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 ZKSCAN4Q969J2 545 aaPredicted RBP13.24□□□□□ -0.29
RFFL-209ENST00000581265 ZNF333Q96JL9 665 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 ZCCHC17Q9NP64 241 aaKnown RBP13.24□□□□□ -0.29
RFFL-209ENST00000581265 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 RBM27Q9P2N5 1060 aaKnown RBP13.24□□□□□ -0.29
RFFL-209ENST00000581265 SNCAIPQ9Y6H5 919 aa13.24□□□□□ -0.29
RFFL-209ENST00000581265 RBBP6Q7Z6E9 1792 aaKnown RBP13.23□□□□□ -0.29
RFFL-209ENST00000581265 IRF6O14896 467 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 ZBTB22O15209 634 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 UBTFL1P0CB47 393 aaPredicted RBP13.23□□□□□ -0.29
RFFL-209ENST00000581265 CETPP11597 493 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 DCAF15Q66K64 600 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 FAM151AQ8WW52 585 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 WRNIP1Q96S55 665 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 CEP126Q9P2H0 1117 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 HDAC5Q9UQL6 1122 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 OTOFQ9HC10 1997 aa13.23□□□□□ -0.29
RFFL-209ENST00000581265 RPAP1Q9BWH6 1393 aaPredicted RBP13.22□□□□□ -0.29
RFFL-209ENST00000581265 TLR2O60603 784 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 WDHD1O75717 1129 aaPredicted RBP13.22□□□□□ -0.29
RFFL-209ENST00000581265 PPIL2Q13356 520 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 SNAPC2Q13487 334 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 ZNF341Q9BYN7 854 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 GNL3LQ9NVN8 582 aaKnown RBP13.22□□□□□ -0.29
RFFL-209ENST00000581265 ZNF112Q9UJU3 913 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 NOB1Q9ULX3 412 aaKnown RBP13.22□□□□□ -0.29
RFFL-209ENST00000581265 DAGLAQ9Y4D2 1042 aa13.22□□□□□ -0.29
RFFL-209ENST00000581265 BTBD19C9JJ37 291 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 SEMA3EO15041 775 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 IL15P40933 162 aaPredicted RBP13.21□□□□□ -0.29
RFFL-209ENST00000581265 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
RFFL-209ENST00000581265 PPATQ06203 517 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 ATP2B3Q16720 1220 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 CDC42EP5Q6NZY7 148 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 MIGA2Q7L4E1 593 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 API5Q9BZZ5 524 aaKnown RBP13.21□□□□□ -0.29
RFFL-209ENST00000581265 SIL1Q9H173 461 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 COPRSQ9NQ92 184 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 PTCH2Q9Y6C5 1203 aa13.21□□□□□ -0.29
RFFL-209ENST00000581265 SALL1Q9NSC2 1324 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 LDHBP07195 334 aaKnown RBP13.2□□□□□ -0.3
RFFL-209ENST00000581265 PRDX5P30044 214 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 INPP5BP32019 993 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 DIXDC1Q155Q3 683 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 HTATIP2Q9BUP3 242 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 DENND2AQ9ULE3 1009 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 NR2E3Q9Y5X4 410 aa13.2□□□□□ -0.3
RFFL-209ENST00000581265 HTTP42858 3142 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 GNRH1P01148 92 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 TCP10Q12799 353 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 NFIAQ12857 509 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 KIF22Q14807 665 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 USP40Q9NVE5 1235 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 FAM198AQ9UFP1 575 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 KCNH4Q9UQ05 1017 aa13.19□□□□□ -0.3
RFFL-209ENST00000581265 LRRFIP2Q9Y608 721 aaKnown RBP13.19□□□□□ -0.3
RFFL-209ENST00000581265 PHKA1P46020 1223 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 LACTBP83111 547 aaPredicted RBP13.18□□□□□ -0.3
RFFL-209ENST00000581265 CCDC102BQ68D86 513 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 C17orf99Q6UX52 265 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 ANKRD23Q86SG2 305 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 SH3TC2Q8TF17 1288 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 ARHGAP45Q92619 1136 aa13.18□□□□□ -0.3
RFFL-209ENST00000581265 PA2G4Q9UQ80 394 aaKnown RBP13.18□□□□□ -0.3
RFFL-209ENST00000581265 RARSP54136 660 aaKnown RBP13.17□□□□□ -0.3
RFFL-209ENST00000581265 NOL9Q5SY16 702 aaKnown RBP13.17□□□□□ -0.3
RFFL-209ENST00000581265 ZFPM1Q8IX07 1006 aa13.17□□□□□ -0.3
RFFL-209ENST00000581265 ZGPATQ8N5A5 531 aaKnown RBP13.17□□□□□ -0.3
RFFL-209ENST00000581265 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.17□□□□□ -0.3
RFFL-209ENST00000581265 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
RFFL-209ENST00000581265 MEIS3Q99687 375 aa13.17□□□□□ -0.3
RFFL-209ENST00000581265 IDI2Q9BXS1 227 aa13.17□□□□□ -0.3
RFFL-209ENST00000581265 CXCL11O14625 94 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 ENTPD3O75355 529 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 ADORA1P30542 326 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 PRMT2P55345 433 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 TIMM10P62072 90 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 MAP3K10Q02779 954 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 MTX1Q13505 466 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 MOGSQ13724 837 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 ARHGAP39Q9C0H5 1083 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 TRIOBPQ9H2D6 2365 aa13.16□□□□□ -0.3
RFFL-209ENST00000581265 GAKO14976 1311 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 PDS5AQ29RF7 1337 aaKnown RBP13.15□□□□□ -0.3
RFFL-209ENST00000581265 PHF20L1A8MW92 1017 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 PDHXO00330 501 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 GNAI3P08754 354 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 RASGRF1Q13972 1273 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 SLF2Q8IX21 1173 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 NKX2-3Q8TAU0 364 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 AKAP2Q9Y2D5 859 aa13.15□□□□□ -0.3
RFFL-209ENST00000581265 CCER2I3L3R5 266 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 SRGAP3O43295 1099 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 RGS3P49796 1198 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 SPTY2D1Q68D10 685 aaPredicted RBP13.14□□□□□ -0.31
RFFL-209ENST00000581265 XAGE2Q96GT9 111 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 ABCF2Q9UG63 623 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 CPA4Q9UI42 421 aa13.14□□□□□ -0.31
RFFL-209ENST00000581265 ATRNL1Q5VV63 1379 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms