RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TMEM39BQ9GZU3 492 aa18.24■□□□□ 0.51
SS18-212ENST00000579061 SAGE1Q9NXZ1 904 aa18.24■□□□□ 0.51
SS18-212ENST00000579061 ABCF2Q9UG63 623 aa18.24■□□□□ 0.51
SS18-212ENST00000579061 LAMB1P07942 1786 aa18.24■□□□□ 0.51
SS18-212ENST00000579061 MCAMP43121 646 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 CACNB3P54284 484 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 CDC42EP5Q6NZY7 148 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 ANKRD13AQ8IZ07 590 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 HOOK2Q96ED9 719 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 SLC10A4Q96EP9 437 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 DBNDD2Q9BQY9 259 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 AK9Q5TCS8 1911 aa18.23■□□□□ 0.51
SS18-212ENST00000579061 OTOFQ9HC10 1997 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 IGSF3O75054 1194 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 TTC39AQ5SRH9 613 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 IFFO2Q5TF58 517 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 SPRYD7Q5W111 196 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 FAM151AQ8WW52 585 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 FZD1Q9UP38 647 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 EXOC6BQ9Y2D4 811 aa18.22■□□□□ 0.51
SS18-212ENST00000579061 ZBTB48P10074 688 aaPredicted RBP18.21■□□□□ 0.51
SS18-212ENST00000579061 TM4SF4P48230 202 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 C20orf194Q5TEA3 1177 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 PI16Q6UXB8 463 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 SIRT2Q8IXJ6 389 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 TNS4Q8IZW8 715 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 EAF2Q96CJ1 260 aaPredicted RBP18.21■□□□□ 0.51
SS18-212ENST00000579061 USP40Q9NVE5 1235 aa18.21■□□□□ 0.51
SS18-212ENST00000579061 DBNLQ9UJU6 430 aaKnown RBP18.21■□□□□ 0.51
SS18-212ENST00000579061 LDHCP07864 332 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 GSTO1P78417 241 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 MECOMQ03112 1051 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 SREBF2Q12772 1141 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 CDAN1Q8IWY9 1227 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 IDI2Q9BXS1 227 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 RNF186Q9NXI6 227 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 CASP8AP2Q9UKL3 1982 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 MROH7-TTC4A0A0A0MT08 1334 aa18.2■□□□□ 0.5
SS18-212ENST00000579061 MAP4K4O95819 1239 aaPredicted RBP18.19■□□□□ 0.5
SS18-212ENST00000579061 MAP3K9P80192 1104 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 DCAF15Q66K64 600 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 RHPN1Q8TCX5 695 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 NSUN4Q96CB9 384 aaKnown RBP18.19■□□□□ 0.5
SS18-212ENST00000579061 KIF1BPQ96EK5 621 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 WNK4Q96J92 1243 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 CLMNQ96JQ2 1002 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 CCDC8Q9H0W5 538 aaPredicted RBP18.19■□□□□ 0.5
SS18-212ENST00000579061 TSKSQ9UJT2 592 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 MAST2Q6P0Q8 1798 aa18.19■□□□□ 0.5
SS18-212ENST00000579061 MYO5AQ9Y4I1 1855 aaKnown RBP18.18■□□□□ 0.5
SS18-212ENST00000579061 GPR75-ASB3A0A0A6YYF3 556 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 MANSC4A6NHS7 340 aaPredicted RBP18.18■□□□□ 0.5
SS18-212ENST00000579061 RAB11FIP3O75154 756 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 ENTPD3O75355 529 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 INHBEP58166 350 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 TBC1D9Q6ZT07 1266 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.18■□□□□ 0.5
SS18-212ENST00000579061 ZNF384Q8TF68 577 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 LRP2BPQ9P2M1 347 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 FAM198AQ9UFP1 575 aa18.18■□□□□ 0.5
SS18-212ENST00000579061 TRPA1O75762 1119 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 BTDP43251 543 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 NFIAQ12857 509 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.17■□□□□ 0.5
SS18-212ENST00000579061 AACSQ86V21 672 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 TLR7Q9NYK1 1049 aaKnown RBP18.17■□□□□ 0.5
SS18-212ENST00000579061 RAI14Q9P0K7 980 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 RFX7Q2KHR2 1363 aa18.17■□□□□ 0.5
SS18-212ENST00000579061 NPM3O75607 178 aaKnown RBP18.16■□□□□ 0.5
SS18-212ENST00000579061 CYP2E1P05181 493 aaPredicted RBP18.16■□□□□ 0.5
SS18-212ENST00000579061 TCP10Q12799 353 aa18.16■□□□□ 0.5
SS18-212ENST00000579061 MKRN3Q13064 507 aaKnown RBP18.16■□□□□ 0.5
SS18-212ENST00000579061 CLASRPQ8N2M8 674 aaKnown RBP18.16■□□□□ 0.5
SS18-212ENST00000579061 SNRKQ9NRH2 765 aa18.16■□□□□ 0.5
SS18-212ENST00000579061 CSADQ9Y600 493 aa18.16■□□□□ 0.5
SS18-212ENST00000579061 DOCK2Q92608 1830 aa18.16■□□□□ 0.5
SS18-212ENST00000579061 RGS3P49796 1198 aa18.15■□□□□ 0.5
SS18-212ENST00000579061 ZNF341Q9BYN7 854 aa18.15■□□□□ 0.5
SS18-212ENST00000579061 IL1RAPL2Q9NP60 686 aa18.15■□□□□ 0.5
SS18-212ENST00000579061 WDHD1O75717 1129 aaPredicted RBP18.14■□□□□ 0.49
SS18-212ENST00000579061 ALDH1A1P00352 501 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 GJA5P36382 358 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 ZAP70P43403 619 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 RHBDL3P58872 404 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 VGLL4Q14135 290 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 NAA16Q6N069 864 aaPredicted RBP18.14■□□□□ 0.49
SS18-212ENST00000579061 TMED8Q6PL24 325 aaPredicted RBP18.14■□□□□ 0.49
SS18-212ENST00000579061 CFHR5Q9BXR6 569 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 ELP3Q9H9T3 547 aa18.14■□□□□ 0.49
SS18-212ENST00000579061 RRP1P56182 461 aaKnown RBP18.13■□□□□ 0.49
SS18-212ENST00000579061 NOM1Q5C9Z4 860 aaKnown RBP18.13■□□□□ 0.49
SS18-212ENST00000579061 OPTNQ96CV9 577 aa18.13■□□□□ 0.49
SS18-212ENST00000579061 YTHDC1Q96MU7 727 aaKnown RBP18.13■□□□□ 0.49
SS18-212ENST00000579061 WRNIP1Q96S55 665 aa18.13■□□□□ 0.49
SS18-212ENST00000579061 ZNF112Q9UJU3 913 aa18.13■□□□□ 0.49
SS18-212ENST00000579061 TESPA1A2RU30 521 aaPredicted RBP18.12■□□□□ 0.49
SS18-212ENST00000579061 BAG3O95817 575 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 PPP4CP60510 307 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 MAP3K10Q02779 954 aa18.12■□□□□ 0.49
SS18-212ENST00000579061 MIGA2Q7L4E1 593 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms