RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	CCDC102B	Q68D86	513 aa		17.13	■□□□□ 0.33
PRPF8-216	ENST00000577001	CCDC191	Q8NCU4	936 aa		17.13	■□□□□ 0.33
PRPF8-216	ENST00000577001	CNNM3	Q8NE01	707 aa		17.13	■□□□□ 0.33
PRPF8-216	ENST00000577001	ADAMTS2	O95450	1211 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	IL2RB	P14784	551 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	IARS	P41252	1262 aa	Known RBP	17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	KMT5B	Q4FZB7	885 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	APPBP2	Q92624	585 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	PLIN2	Q99541	437 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	ZSWIM5	Q9P217	1185 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	LRRC37A3	O60309	1634 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	SEC31A	O94979	1220 aa	Known RBP	17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	E4F1	Q66K89	784 aa	Predicted RBP	17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	ADAL	Q6DHV7	355 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	FBXO38	Q6PIJ6	1188 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	SHC4	Q6S5L8	630 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	FOXP4	Q8IVH2	680 aa	Predicted RBP	17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	MB21D2	Q8IYB1	491 aa	Predicted RBP	17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	BTG4	Q9NY30	223 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	C1orf167	Q5SNV9	1468 aa		17.12	■□□□□ 0.33
PRPF8-216	ENST00000577001	SMTNL1	A8MU46	457 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	PES1	O00541	588 aa	Known RBP	17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	RANBP6	O60518	1105 aa	Known RBP	17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	PCDHA5	Q9Y5H7	936 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	POLR2D	O15514	142 aa	Known RBP	17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	ZBTB43	O43298	467 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	TRIM29	Q14134	588 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	SKIDA1	Q1XH10	827 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	RNF216	Q9NWF9	866 aa	Predicted RBP	17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	PDE6A	P16499	860 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	TTLL11	Q8NHH1	800 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	UIMC1	Q96RL1	719 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	LRP2BP	Q9P2M1	347 aa		17.11	■□□□□ 0.33
PRPF8-216	ENST00000577001	TPM3	P06753	285 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	ERCC3	P19447	782 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	NAT10	Q9H0A0	1025 aa	Known RBP	17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	CABP5	Q9NP86	173 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	ANKRD18B	A2A2Z9	1011 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	ZNF274	Q96GC6	653 aa	Predicted RBP	17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	CTNNA3	Q9UI47	895 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	SLC12A7	Q9Y666	1083 aa		17.1	■□□□□ 0.33
PRPF8-216	ENST00000577001	MTF1	Q14872	753 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	APOA5	Q6Q788	366 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	MPHOSPH8	Q99549	860 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	VPS54	Q9P1Q0	977 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	RBM43	Q6ZSC3	357 aa	Known RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	LCORL	Q8N3X6	602 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	LLPH	Q9BRT6	129 aa	Known RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	RTEL1	Q9NZ71	1219 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	CGN	Q9P2M7	1197 aa	Known RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	SERTAD1	Q9UHV2	236 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	ANGEL1	Q9UNK9	670 aa	Known RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	PCDHB6	Q9Y5E3	794 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	SLC4A4	Q9Y6R1	1079 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	GYS2	P54840	703 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	AXDND1	Q5T1B0	1012 aa	Predicted RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	DHX58	Q96C10	678 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	SLC4A9	Q96Q91	983 aa		17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	MARF1	Q9Y4F3	1742 aa	Known RBP	17.09	■□□□□ 0.33
PRPF8-216	ENST00000577001	KIF18A	Q8NI77	898 aa		17.08	■□□□□ 0.33
PRPF8-216	ENST00000577001	PPP1R13B	Q96KQ4	1090 aa		17.08	■□□□□ 0.33
PRPF8-216	ENST00000577001	SAMSN1	Q9NSI8	373 aa	Known RBP	17.08	■□□□□ 0.33
PRPF8-216	ENST00000577001	RAI14	Q9P0K7	980 aa		17.08	■□□□□ 0.33
PRPF8-216	ENST00000577001	GYG1	P46976	350 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	FAM182B	Q5T319	152 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	LZTFL1	Q9NQ48	299 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	FAM170A	A1A519	330 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	NMT2	O60551	498 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	CCDC34	Q96HJ3	373 aa		17.08	■□□□□ 0.32
PRPF8-216	ENST00000577001	RASGRF1	Q13972	1273 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	BRINP3	Q76B58	766 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	DIS3L2	Q8IYB7	885 aa	Known RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	CARD6	Q9BX69	1037 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	ZCCHC17	Q9NP64	241 aa	Known RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	AKAP2	Q9Y2D5	859 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	CACNA1F	O60840	1977 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	UTRN	P46939	3433 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	NUTM2B	A6NNL0	878 aa	Predicted RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	NUTM2E	B1AL46	878 aa	Predicted RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	NLRP10	Q86W26	655 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	DZIP3	Q86Y13	1208 aa	Known RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	NUTM2A	Q8IVF1	878 aa	Predicted RBP	17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	BLZF1	Q9H2G9	400 aa		17.07	■□□□□ 0.32
PRPF8-216	ENST00000577001	DHX16	O60231	1041 aa	Known RBP	17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	DYNLL1	P63167	89 aa	Known RBP	17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	ARHGAP29	Q52LW3	1261 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	ATG3	Q9NT62	314 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	WNT7A	O00755	349 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	CTAGE5	O15320	804 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	FMR1	Q06787	632 aa	Known RBP eCLIP	17.06	■□□□□ 0.32	6e-8	■■■■□ 22.8
PRPF8-216	ENST00000577001	ZNF174	Q15697	407 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	TEX35	Q5T0J7	233 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	KCNG4	Q8TDN1	519 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	EPSTI1	Q96J88	318 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	17.06	■□□□□ 0.32	1e-6	■■□□□ 14.4
PRPF8-216	ENST00000577001	KCNH3	Q9ULD8	1083 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	SALL1	Q9NSC2	1324 aa		17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	VEGFA	P15692	232 aa	Predicted RBP	17.06	■□□□□ 0.32
PRPF8-216	ENST00000577001	GTF2F1	P35269	517 aa	Known RBP eCLIP	17.06	■□□□□ 0.32

Retrieved 100 of 20,778 RNA–protein pairs in 173 ms