RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CNTNAP3BQ96NU0 1288 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 CNTNAP3Q9BZ76 1288 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 CHRDQ9H2X0 955 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 NLRP2Q9NX02 1062 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 KANSL3Q9P2N6 904 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 NKTRP30414 1462 aaKnown RBP8.25□□□□□ -1.09
VPS53-212ENST00000572259 STRCP1A6NGW2 1772 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 MSH6P52701 1360 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 NCOA3Q9Y6Q9 1424 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 MARCH6O60337 910 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 EDN3P14138 238 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 RNFT1Q5M7Z0 435 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 GIMAP6Q6P9H5 292 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 FBF1Q8TES7 1133 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 NEXMIFQ5QGS0 1516 aa8.24□□□□□ -1.09
VPS53-212ENST00000572259 TMEM94Q12767 1356 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 SETBP1Q9Y6X0 1596 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 PPLO60437 1756 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 ADAMTS13Q76LX8 1427 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 NEURL1BA8MQ27 555 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 ATF3P18847 181 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 NRLP54845 237 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 MLLT1Q03111 559 aaPredicted RBP8.23□□□□□ -1.09
VPS53-212ENST00000572259 SRSF11Q05519 484 aaKnown RBP8.23□□□□□ -1.09
VPS53-212ENST00000572259 GALNT12Q8IXK2 581 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 NSUN5Q96P11 429 aaKnown RBP8.23□□□□□ -1.09
VPS53-212ENST00000572259 SETDB2Q96T68 719 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 DUSP9Q99956 384 aaKnown RBP8.23□□□□□ -1.09
VPS53-212ENST00000572259 RBSNQ9H1K0 784 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 C19orf44Q9H6X5 657 aa8.23□□□□□ -1.09
VPS53-212ENST00000572259 DNAJB12Q9NXW2 375 aaKnown RBP8.23□□□□□ -1.09
VPS53-212ENST00000572259 LOC102724428A0A0B4J2F2 783 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 GADD45BO75293 160 aaPredicted RBP8.22□□□□□ -1.09
VPS53-212ENST00000572259 WFS1O76024 890 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 GHRHP01286 108 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 SIK1P57059 783 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 HFE2Q6ZVN8 426 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 NOP9Q86U38 636 aaKnown RBP8.22□□□□□ -1.09
VPS53-212ENST00000572259 GOLGA6L1Q8N7Z2 621 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 TRPM4Q8TD43 1214 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 MRS2Q9HD23 443 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 PARP2Q9UGN5 583 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 NWD1Q149M9 1564 aa8.22□□□□□ -1.09
VPS53-212ENST00000572259 SPATA31E1Q6ZUB1 1445 aa8.21□□□□□ -1.09
VPS53-212ENST00000572259 RECKO95980 971 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 ALAS2P22557 587 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 GPLD1P80108 840 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 PSMD2Q13200 908 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS53-212ENST00000572259 EPS8L3Q8TE67 593 aaKnown RBP8.21□□□□□ -1.1
VPS53-212ENST00000572259 TNFRSF25Q93038 417 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 FRMD6Q96NE9 622 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 OXCT2Q9BYC2 517 aaPredicted RBP8.21□□□□□ -1.1
VPS53-212ENST00000572259 NPHS2Q9NP85 383 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 SALL4Q9UJQ4 1053 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 GGA1Q9UJY5 639 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 GDF2Q9UK05 429 aaPredicted RBP8.21□□□□□ -1.1
VPS53-212ENST00000572259 SPG7Q9UQ90 795 aa8.21□□□□□ -1.1
VPS53-212ENST00000572259 XIRP1Q702N8 1843 aaKnown RBP8.2□□□□□ -1.1
VPS53-212ENST00000572259 ZBTB42B2RXF5 422 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 J3QW42 95 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 ADAMTS2O95450 1211 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 HOXD8P13378 290 aaPredicted RBP8.2□□□□□ -1.1
VPS53-212ENST00000572259 ADH7P40394 386 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 COL13A1Q5TAT6 717 aaPredicted RBP8.2□□□□□ -1.1
VPS53-212ENST00000572259 DPH6Q7L8W6 267 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 FAM35AQ86V20 835 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 MICALL1Q8N3F8 863 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 DCAF11Q8TEB1 546 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 PPP4R2Q9NY27 417 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 KLF15Q9UIH9 416 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 ADGRF5Q8IZF2 1346 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 METP08581 1390 aa8.2□□□□□ -1.1
VPS53-212ENST00000572259 ALKQ9UM73 1620 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 ADARB2-AS1A8MUL3 147 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 KIF4AO95239 1232 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 CPB1P15086 417 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 EIF2AK2P19525 551 aaKnown RBP8.19□□□□□ -1.1
VPS53-212ENST00000572259 GNA15P30679 374 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 IRS1P35568 1242 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 MICAL1Q8TDZ2 1067 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 EHD4Q9H223 541 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 SLC6A14Q9UN76 642 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 TMA7Q9Y2S6 64 aaKnown RBP8.19□□□□□ -1.1
VPS53-212ENST00000572259 RIPOR2Q9Y4F9 1068 aa8.19□□□□□ -1.1
VPS53-212ENST00000572259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.19□□□□□ -1.1
VPS53-212ENST00000572259 DHX57Q6P158 1386 aaKnown RBP8.19□□□□□ -1.1
VPS53-212ENST00000572259 NRXN3Q9Y4C0 1643 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 IFT172Q9UG01 1749 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 ELOA3CA0A087WX78 387 aaPredicted RBP8.18□□□□□ -1.1
VPS53-212ENST00000572259 ELOA3DA6NLF2 546 aaPredicted RBP8.18□□□□□ -1.1
VPS53-212ENST00000572259 GIPC1O14908 333 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 GMPRP36959 345 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 KRT76Q01546 638 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 ELOA3BQ3SY89 546 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 PI16Q6UXB8 463 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 FCHSD1Q86WN1 690 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 ELOA3Q8NG57 546 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 OSMRQ99650 979 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 C14orf93Q9H972 538 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms