RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GTF2A2P52657 109 aa17.25■□□□□ 0.35
CLN3-235ENST00000568497 RBM5P52756 815 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLN3-235ENST00000568497 LACTBP83111 547 aaPredicted RBP17.25■□□□□ 0.35
CLN3-235ENST00000568497 MVPQ14764 893 aaKnown RBP17.25■□□□□ 0.35
CLN3-235ENST00000568497 VGLL2Q8N8G2 317 aa17.25■□□□□ 0.35
CLN3-235ENST00000568497 CNKSR2Q8WXI2 1034 aa17.25■□□□□ 0.35
CLN3-235ENST00000568497 ADORA1P30542 326 aa17.24■□□□□ 0.35
CLN3-235ENST00000568497 RASA3Q14644 834 aa17.24■□□□□ 0.35
CLN3-235ENST00000568497 CFAP100Q494V2 611 aa17.24■□□□□ 0.35
CLN3-235ENST00000568497 BIN2Q9UBW5 565 aaPredicted RBP17.24■□□□□ 0.35
CLN3-235ENST00000568497 SPDYE2BA6NHP3 402 aa17.23■□□□□ 0.35
CLN3-235ENST00000568497 GNRH1P01148 92 aa17.23■□□□□ 0.35
CLN3-235ENST00000568497 SPDYE6P0CI01 402 aa17.23■□□□□ 0.35
CLN3-235ENST00000568497 PRMT2P55345 433 aa17.23■□□□□ 0.35
CLN3-235ENST00000568497 RRP1P56182 461 aaKnown RBP17.23■□□□□ 0.35
CLN3-235ENST00000568497 EVI5O60447 810 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 TLR2O60603 784 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 FARP2O94887 1054 aaPredicted RBP17.22■□□□□ 0.35
CLN3-235ENST00000568497 GJA8P48165 433 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 BCAMP50895 628 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 TFCP2Q12800 502 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 RAET1EQ8TD07 263 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 PRMT6Q96LA8 375 aaPredicted RBP17.22■□□□□ 0.35
CLN3-235ENST00000568497 RNF208Q9H0X6 261 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 CD209Q9NNX6 404 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 CSADQ9Y600 493 aa17.22■□□□□ 0.35
CLN3-235ENST00000568497 LAMA3Q16787 3333 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 CCL5P13501 91 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 IRX6P78412 446 aaPredicted RBP17.21■□□□□ 0.35
CLN3-235ENST00000568497 ATP8B2P98198 1209 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 VGLL4Q14135 290 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 CEP85Q6P2H3 762 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 CERS5Q8N5B7 392 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 DEFB123Q8N688 67 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 FAM84BQ96KN1 310 aaPredicted RBP17.21■□□□□ 0.35
CLN3-235ENST00000568497 CRBNQ96SW2 442 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 STAP2Q9UGK3 403 aa17.21■□□□□ 0.35
CLN3-235ENST00000568497 MROH5Q6ZUA9 1318 aa17.21■□□□□ 0.34
CLN3-235ENST00000568497 APBB1O00213 710 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 PDE8BO95263 885 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 GJB1P08034 283 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 GRK4P32298 578 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 TIMM10P62072 90 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 CHAF1AQ13111 956 aaPredicted RBP17.2■□□□□ 0.34
CLN3-235ENST00000568497 TNFAIP1Q13829 316 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 GRIK5Q16478 980 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.2■□□□□ 0.34
CLN3-235ENST00000568497 UBE2Q1Q7Z7E8 422 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 SIRT2Q8IXJ6 389 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 COL25A1Q9BXS0 654 aaPredicted RBP17.2■□□□□ 0.34
CLN3-235ENST00000568497 COPRSQ9NQ92 184 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 AOX1Q06278 1338 aa17.2■□□□□ 0.34
CLN3-235ENST00000568497 FGFR2P21802 821 aa17.19■□□□□ 0.34
CLN3-235ENST00000568497 MTX1Q13505 466 aa17.19■□□□□ 0.34
CLN3-235ENST00000568497 POLA2Q14181 598 aa17.19■□□□□ 0.34
CLN3-235ENST00000568497 SRRDQ9UH36 339 aa17.19■□□□□ 0.34
CLN3-235ENST00000568497 FMNL1O95466 1100 aaPredicted RBP17.18■□□□□ 0.34
CLN3-235ENST00000568497 CETPP11597 493 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 HOXD10P28358 340 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 PSMC4P43686 418 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 FKBP1AP62942 108 aaKnown RBP17.18■□□□□ 0.34
CLN3-235ENST00000568497 UBXN2AP68543 259 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 Q7L0L9 218 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 U2AF1L4Q8WU68 220 aaKnown RBP17.18■□□□□ 0.34
CLN3-235ENST00000568497 TRIM47Q96LD4 638 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 ZCCHC17Q9NP64 241 aaKnown RBP17.18■□□□□ 0.34
CLN3-235ENST00000568497 ZBTB40Q9NUA8 1239 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 CEP126Q9P2H0 1117 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 EXOC6BQ9Y2D4 811 aa17.18■□□□□ 0.34
CLN3-235ENST00000568497 BTBD19C9JJ37 291 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 SURF6O75683 361 aaKnown RBP17.17■□□□□ 0.34
CLN3-235ENST00000568497 HIBADHP31937 336 aaKnown RBP17.17■□□□□ 0.34
CLN3-235ENST00000568497 MAP3K9P80192 1104 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 UBE4AQ14139 1066 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 ATP2B3Q16720 1220 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 CDAN1Q8IWY9 1227 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 CPA4Q9UI42 421 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 STXBP5LQ9Y2K9 1186 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 SUPT16HQ9Y5B9 1047 aaKnown RBP17.17■□□□□ 0.34
CLN3-235ENST00000568497 MYPNQ86TC9 1320 aa17.17■□□□□ 0.34
CLN3-235ENST00000568497 CIAO1O76071 339 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 OSBPP22059 807 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 IL15P40933 162 aaPredicted RBP17.16■□□□□ 0.34
CLN3-235ENST00000568497 PHKA1P46020 1223 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 OS9Q13438 667 aaPredicted RBP17.16■□□□□ 0.34
CLN3-235ENST00000568497 PUM3Q15397 648 aaKnown RBP17.16■□□□□ 0.34
CLN3-235ENST00000568497 C15orf52Q6ZUT6 534 aaKnown RBP17.16■□□□□ 0.34
CLN3-235ENST00000568497 ZNF804AQ7Z570 1209 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.16■□□□□ 0.34
CLN3-235ENST00000568497 SSH3Q8TE77 659 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 DDX19BQ9UMR2 479 aa17.16■□□□□ 0.34
CLN3-235ENST00000568497 TCP10L2B9ZVM9 353 aa17.15■□□□□ 0.34
CLN3-235ENST00000568497 G3BP1Q13283 466 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN3-235ENST00000568497 PDE3AQ14432 1141 aa17.15■□□□□ 0.34
CLN3-235ENST00000568497 FBXO33Q7Z6M2 555 aa17.15■□□□□ 0.34
CLN3-235ENST00000568497 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN3-235ENST00000568497 SPDYE5A6NIY4 337 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 MS4A1P11836 297 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 SLC5A1P13866 664 aa17.14■□□□□ 0.33
CLN3-235ENST00000568497 IL1R1P14778 569 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms