RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 ARID4AP29374 1257 aaPredicted RBP23.02■■□□□ 1.28
SMPD3-209ENST00000567223 CACNB3P54284 484 aa23.02■■□□□ 1.28
SMPD3-209ENST00000567223 MAP3K9P80192 1104 aa23.02■■□□□ 1.28
SMPD3-209ENST00000567223 MKRN3Q13064 507 aaKnown RBP23.02■■□□□ 1.28
SMPD3-209ENST00000567223 DIXDC1Q155Q3 683 aa23.02■■□□□ 1.28
SMPD3-209ENST00000567223 SPTY2D1Q68D10 685 aaPredicted RBP23.02■■□□□ 1.28
SMPD3-209ENST00000567223 CDC42EP5Q6NZY7 148 aa23.02■■□□□ 1.28
SMPD3-209ENST00000567223 SLF2Q8IX21 1173 aa23.02■■□□□ 1.28
SMPD3-209ENST00000567223 NOP58Q9Y2X3 529 aaKnown RBP23.02■■□□□ 1.28
SMPD3-209ENST00000567223 RFX7Q2KHR2 1363 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 IGSF3O75054 1194 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 GJA5P36382 358 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 VGLL4Q14135 290 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 PKN2Q16513 984 aaKnown RBP23.01■■□□□ 1.27
SMPD3-209ENST00000567223 DCAF15Q66K64 600 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 CTU1Q7Z7A3 348 aaKnown RBP23.01■■□□□ 1.27
SMPD3-209ENST00000567223 IDI2Q9BXS1 227 aa23.01■■□□□ 1.27
SMPD3-209ENST00000567223 GPR25O00155 361 aa23■■□□□ 1.27
SMPD3-209ENST00000567223 MS4A1P11836 297 aa23■■□□□ 1.27
SMPD3-209ENST00000567223 ITPRIPQ8IWB1 547 aa23■■□□□ 1.27
SMPD3-209ENST00000567223 ZNF296Q8WUU4 475 aaPredicted RBP23■■□□□ 1.27
SMPD3-209ENST00000567223 OPTNQ96CV9 577 aa23■■□□□ 1.27
SMPD3-209ENST00000567223 CSADQ9Y600 493 aa23■■□□□ 1.27
SMPD3-209ENST00000567223 SPDYE5A6NIY4 337 aa22.99■■□□□ 1.27
SMPD3-209ENST00000567223 TBC1D8O95759 1140 aa22.99■■□□□ 1.27
SMPD3-209ENST00000567223 OTUD7BQ6GQQ9 843 aa22.99■■□□□ 1.27
SMPD3-209ENST00000567223 MS4A4AQ96JQ5 239 aa22.99■■□□□ 1.27
SMPD3-209ENST00000567223 IGF2BP3O00425 579 aaKnown RBP eCLIP22.98■■□□□ 1.27
SMPD3-209ENST00000567223 MAP4K4O95819 1239 aaPredicted RBP22.98■■□□□ 1.27
SMPD3-209ENST00000567223 UQCRFS1P1P0C7P4 283 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 SPATA5Q8NB90 893 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 ZNF512BQ96KM6 892 aaPredicted RBP22.98■■□□□ 1.27
SMPD3-209ENST00000567223 NEUROD6Q96NK8 337 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 ELP3Q9H9T3 547 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 HMG20BQ9P0W2 317 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 ZNF112Q9UJU3 913 aa22.98■■□□□ 1.27
SMPD3-209ENST00000567223 ENTPD3O75355 529 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 NPM3O75607 178 aaKnown RBP22.97■■□□□ 1.27
SMPD3-209ENST00000567223 RGS19P49795 217 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 DZIP1Q86YF9 867 aaKnown RBP22.97■■□□□ 1.27
SMPD3-209ENST00000567223 USP40Q9NVE5 1235 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 FAM198AQ9UFP1 575 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 SNCAIPQ9Y6H5 919 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 MYH2Q9UKX2 1941 aa22.97■■□□□ 1.27
SMPD3-209ENST00000567223 GTF2A2P52657 109 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 NFIAQ12857 509 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 TNNI3KQ59H18 835 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 ERO1BQ86YB8 467 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 WRNIP1Q96S55 665 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 ZNF341Q9BYN7 854 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 ZCCHC17Q9NP64 241 aaKnown RBP22.96■■□□□ 1.27
SMPD3-209ENST00000567223 ABCF2Q9UG63 623 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 FPGT-TNNI3KV9GXZ4 949 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 MROH7-TTC4A0A0A0MT08 1334 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 ATRNL1Q5VV63 1379 aa22.96■■□□□ 1.27
SMPD3-209ENST00000567223 GPR75-ASB3A0A0A6YYF3 556 aa22.95■■□□□ 1.26
SMPD3-209ENST00000567223 GORABQ5T7V8 394 aa22.95■■□□□ 1.26
SMPD3-209ENST00000567223 ERICH6Q7L0X2 663 aa22.95■■□□□ 1.26
SMPD3-209ENST00000567223 PTPN18Q99952 460 aa22.95■■□□□ 1.26
SMPD3-209ENST00000567223 FKTNO75072 461 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 SURF6O75683 361 aaKnown RBP22.94■■□□□ 1.26
SMPD3-209ENST00000567223 MCAMP43121 646 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 MAP3K10Q02779 954 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 MECOMQ03112 1051 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 CEP85Q6P2H3 762 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 ZNF384Q8TF68 577 aa22.94■■□□□ 1.26
SMPD3-209ENST00000567223 COL2A1P02458 1487 aaPredicted RBP22.93■■□□□ 1.26
SMPD3-209ENST00000567223 GSTO1P78417 241 aa22.93■■□□□ 1.26
SMPD3-209ENST00000567223 PPATQ06203 517 aa22.93■■□□□ 1.26
SMPD3-209ENST00000567223 PPIL2Q13356 520 aa22.93■■□□□ 1.26
SMPD3-209ENST00000567223 NOL9Q5SY16 702 aaKnown RBP22.93■■□□□ 1.26
SMPD3-209ENST00000567223 NSUN4Q96CB9 384 aaKnown RBP22.93■■□□□ 1.26
SMPD3-209ENST00000567223 R3HDMLQ9H3Y0 253 aa22.93■■□□□ 1.26
SMPD3-209ENST00000567223 C1orf115Q9H7X2 142 aa22.93■■□□□ 1.26
SMPD3-209ENST00000567223 CCDC85CA6NKD9 419 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 WDHD1O75717 1129 aaPredicted RBP22.92■■□□□ 1.26
SMPD3-209ENST00000567223 LDHCP07864 332 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 TCP10Q12799 353 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 CCDC158Q5M9N0 1113 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 HTTP42858 3142 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 DOCK2Q92608 1830 aa22.92■■□□□ 1.26
SMPD3-209ENST00000567223 BTDP43251 543 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 RHBDL3P58872 404 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 CNKSR2Q8WXI2 1034 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 BRI3BPQ8WY22 251 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 ZKSCAN4Q969J2 545 aaPredicted RBP22.91■■□□□ 1.26
SMPD3-209ENST00000567223 OTUD5Q96G74 571 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 MAST2Q6P0Q8 1798 aa22.91■■□□□ 1.26
SMPD3-209ENST00000567223 CETPP11597 493 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 RGS3P49796 1198 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 CRHR2Q13324 411 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 OS9Q13438 667 aaPredicted RBP22.9■■□□□ 1.26
SMPD3-209ENST00000567223 PI16Q6UXB8 463 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 PANK1Q8TE04 598 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 DDX19BQ9UMR2 479 aa22.9■■□□□ 1.26
SMPD3-209ENST00000567223 IRF6O14896 467 aa22.89■■□□□ 1.25
SMPD3-209ENST00000567223 SNAPC2Q13487 334 aa22.89■■□□□ 1.25
SMPD3-209ENST00000567223 FBXO46Q6PJ61 603 aaPredicted RBP22.89■■□□□ 1.25
SMPD3-209ENST00000567223 MIGA2Q7L4E1 593 aa22.89■■□□□ 1.25
SMPD3-209ENST00000567223 ERC1Q8IUD2 1116 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms